* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SHT’ ...
** package ‘SHT’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpLdq440/R.INSTALL31632a201dc9ba/SHT/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov1_mxPBF.cpp -o cpp_cov1_mxPBF.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov2_2012LC.cpp -o cpp_cov2_2012LC.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov2_mxPBF.cpp -o cpp_cov2_mxPBF.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_energy.cpp -o cpp_energy.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_eqdist_2014BG.cpp -o cpp_eqdist_2014BG.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_extras.cpp -o cpp_extras.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_mean2_2014CLX.cpp -o cpp_mean2_2014CLX.o
cpp_mean2_2014CLX.cpp: In function ‘arma::mat adjust_clime(arma::mat)’:
cpp_mean2_2014CLX.cpp:21:10: warning: variable ‘theval’ set but not used [-Wunused-but-set-variable]
21 | double theval = 0.0;
| ^~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_mean2_mxPBF.cpp -o cpp_mean2_mxPBF.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_norm_1d_moments.cpp -o cpp_norm_1d_moments.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_tester.cpp -o cpp_tester.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SHT.so RcppExports.o cpp_cov1_mxPBF.o cpp_cov2_2012LC.o cpp_cov2_mxPBF.o cpp_energy.o cpp_eqdist_2014BG.o cpp_extras.o cpp_mean2_2014CLX.o cpp_mean2_mxPBF.o cpp_norm_1d_moments.o cpp_tester.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpLdq440/R.INSTALL31632a201dc9ba/SHT/src'
make[1]: Entering directory '/tmp/RtmpLdq440/R.INSTALL31632a201dc9ba/SHT/src'
make[1]: Leaving directory '/tmp/RtmpLdq440/R.INSTALL31632a201dc9ba/SHT/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SHT/00new/SHT/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SHT’
finding HTML links ... done
cov1.2012Fisher html
cov1.2015WL html
cov2.2012LC html
cov2.2013CLX html
cov2.2015WL html
cov2.mxPBF html
covk.2001Schott html
covk.2007Schott html
eqdist.2014BG html
mean1.1931Hotelling html
mean1.1958Dempster html
mean1.1996BS html
mean1.2008SD html
mean1.ttest html
mean2.1931Hotelling html
mean2.1958Dempster html
mean2.1965Yao html
mean2.1980Johansen html
mean2.1986NVM html
mean2.1996BS html
mean2.2004KY html
mean2.2008SD html
mean2.2011LJW html
mean2.2014CLX html
mean2.2014Thulin html
mean2.mxPBF html
mean2.ttest html
meank.2007Schott html
meank.2009ZX html
meank.2019CPH html
meank.anova html
mvar1.1998AS html
mvar1.LRT html
mvar2.1930PN html
mvar2.1976PL html
mvar2.1982Muirhead html
mvar2.2012ZXC html
mvar2.LRT html
norm.1965SW html
norm.1972SF html
norm.1980JB html
norm.1996AJB html
norm.2008RJB html
sim1.2017Liu html
sim1.LRT html
sim2.2018HN html
simplex.uniform html
unif.2017YMi html
unif.2017YMq html
usek1d html
useknd html
var1.chisq html
var2.F html
vark.1937Bartlett html
vark.1960Levene html
vark.1974BF html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SHT)