* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘SHARK4R’ ... ** this is package ‘SHARK4R’ version ‘1.0.2’ ** package ‘SHARK4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘SHARK4R’ finding HTML links ... done SHARK4R-package html add_worms_taxonomy html assign_phytoplankton_group html check_Bacterioplankton html check_Chlorophyll html check_Epibenthos html check_EpibenthosDropvideo html check_GreySeal html check_HarbourPorpoise html check_HarbourSeal html check_PhysicalChemical html check_Phytoplankton html check_Picoplankton html check_PrimaryProduction html check_RingedSeal html check_SealPathology html check_Sedimentation html check_Zoobenthos html check_Zooplankton html check_bacterial_carbon html check_bacterial_concentration html check_bacterial_production html check_chlorophyll_conc html check_code_proj html check_codes html check_datatype html check_deliv_Bacterioplankton html check_deliv_Chlorophyll html check_deliv_Epibenthos html check_deliv_EpibenthosDropvideo html check_deliv_GreySeal html check_deliv_HarbourPorpoise html check_deliv_HarbourSeal html check_deliv_PhysicalChemical html check_deliv_Phytoplankton html check_deliv_Picoplankton html check_deliv_PrimaryProduction html check_deliv_RingedSeal html check_deliv_SealPathology html check_deliv_Sedimentation html check_deliv_Zoobenthos html check_deliv_Zooplankton html check_depth html check_epibenthos_abundclass_logical html check_epibenthos_counted html check_epibenthos_cover_logical html check_epibenthos_coverclass_logical html check_epibenthos_coverpercent_logical html check_epibenthos_dryweight html check_epibenthos_sedimentdepos_logical html check_epibenthos_specdistr_maxdepth html check_epibenthos_specdistr_mindepth html check_epibenthos_totcover_logical html check_fields html check_greyseal_counted html check_harbourseal_counted html check_harbporp_positivemin html check_logical_parameter html check_nominal_station html check_onland html check_outliers html check_parameter_rules html check_phytoplankton_abund html check_phytoplankton_biovol html check_phytoplankton_carbon html check_phytoplankton_counted html check_picoplankton_abundance html check_picoplankton_biovol html check_picoplankton_carbon html check_picoplankton_counted html check_primaryproduction_carbonprod html check_primaryproduction_carbonprod_hour html check_primaryproduction_carbonprodlight html check_ringedseal_calccounted html check_setup html check_station_distance html check_value_logical html check_zero_positions html check_zero_value html check_zoobenthos_BQIm html check_zoobenthos_BQIm_logical html check_zoobenthos_abund html check_zoobenthos_counted html check_zoobenthos_wetweight html check_zoobenthos_wetweight_logical html check_zooplankton_abund html check_zooplankton_carbon html check_zooplankton_counted html check_zooplankton_length_mean html check_zooplankton_length_median html check_zooplankton_wetweight html check_zooplankton_wetweight_area html check_zooplankton_wetweight_volume html clean_shark4r_cache html construct_dyntaxa_table html convert_ddmm_to_dd html defunct html find_required_fields html get_algaebase_genus html get_algaebase_species html get_delivery_template html get_dyntaxa_dwca html get_dyntaxa_parent_ids html get_dyntaxa_records html get_hab_list html get_nomp_list html get_nua_external_links html get_nua_harmfulness html get_nua_media_links html get_nua_taxa html get_peg_list html get_shark_codes html get_shark_data html get_shark_datasets html get_shark_options html get_shark_statistics html get_shark_table_counts html get_toxin_list html get_worms_classification html get_worms_records html get_worms_records_name html get_worms_taxonomy_tree html ifcb_is_near_land html ifcb_which_basin html is_in_dyntaxa html load_shark4r_fields html load_shark4r_stats html load_station_bundle html lookup_xy html match_algaebase html match_algaebase_genus html match_algaebase_species html match_algaebase_taxa html match_dyntaxa html match_dyntaxa_taxa html match_station html match_taxon_name html match_worms_taxa html match_wormstaxa html nominal_station html parse_scientific_names html plot_map_leaflet html plot_map_leaflet_deliv html positions_are_near_land html read_ptbx html read_shark html read_shark_deliv html run_qc_app html scatterplot html shark_read html shark_read_deliv html shark_read_deliv_xls html shark_read_zip html translate_shark_datatype html update_dyntaxa_taxonomy html update_worms_taxonomy html which_basin html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SHARK4R)