* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SHARK4R’ ...
** this is package ‘SHARK4R’ version ‘1.0.1’
** package ‘SHARK4R’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SHARK4R’
finding HTML links ... done
SHARK4R-package html
add_worms_taxonomy html
assign_phytoplankton_group html
check_Bacterioplankton html
check_Chlorophyll html
check_Epibenthos html
check_EpibenthosDropvideo html
check_GreySeal html
check_HarbourPorpoise html
check_HarbourSeal html
check_PhysicalChemical html
check_Phytoplankton html
check_Picoplankton html
check_PrimaryProduction html
check_RingedSeal html
check_SealPathology html
check_Sedimentation html
check_Zoobenthos html
check_Zooplankton html
check_bacterial_carbon html
check_bacterial_concentration html
check_bacterial_production html
check_chlorophyll_conc html
check_code_proj html
check_codes html
check_datatype html
check_deliv_Bacterioplankton html
check_deliv_Chlorophyll html
check_deliv_Epibenthos html
check_deliv_EpibenthosDropvideo html
check_deliv_GreySeal html
check_deliv_HarbourPorpoise html
check_deliv_HarbourSeal html
check_deliv_PhysicalChemical html
check_deliv_Phytoplankton html
check_deliv_Picoplankton html
check_deliv_PrimaryProduction html
check_deliv_RingedSeal html
check_deliv_SealPathology html
check_deliv_Sedimentation html
check_deliv_Zoobenthos html
check_deliv_Zooplankton html
check_depth html
check_epibenthos_abundclass_logical html
check_epibenthos_counted html
check_epibenthos_cover_logical html
check_epibenthos_coverclass_logical html
check_epibenthos_coverpercent_logical html
check_epibenthos_dryweight html
check_epibenthos_sedimentdepos_logical
html
check_epibenthos_specdistr_maxdepth html
check_epibenthos_specdistr_mindepth html
check_epibenthos_totcover_logical html
check_fields html
check_greyseal_counted html
check_harbourseal_counted html
check_harbporp_positivemin html
check_logical_parameter html
check_nominal_station html
check_onland html
check_outliers html
check_parameter_rules html
check_phytoplankton_abund html
check_phytoplankton_biovol html
check_phytoplankton_carbon html
check_phytoplankton_counted html
check_picoplankton_abundance html
check_picoplankton_biovol html
check_picoplankton_carbon html
check_picoplankton_counted html
check_primaryproduction_carbonprod html
check_primaryproduction_carbonprod_hour
html
check_primaryproduction_carbonprodlight
html
check_ringedseal_calccounted html
check_setup html
check_station_distance html
check_value_logical html
check_zero_positions html
check_zero_value html
check_zoobenthos_BQIm html
check_zoobenthos_BQIm_logical html
check_zoobenthos_abund html
check_zoobenthos_counted html
check_zoobenthos_wetweight html
check_zoobenthos_wetweight_logical html
check_zooplankton_abund html
check_zooplankton_carbon html
check_zooplankton_counted html
check_zooplankton_length_mean html
check_zooplankton_length_median html
check_zooplankton_wetweight html
check_zooplankton_wetweight_area html
check_zooplankton_wetweight_volume html
clean_shark4r_cache html
construct_dyntaxa_table html
convert_ddmm_to_dd html
defunct html
find_required_fields html
get_algaebase_genus html
get_algaebase_species html
get_delivery_template html
get_dyntaxa_dwca html
get_dyntaxa_parent_ids html
get_dyntaxa_records html
get_hab_list html
get_nomp_list html
get_nua_external_links html
get_nua_harmfulness html
get_nua_media_links html
get_nua_taxa html
get_peg_list html
get_shark_codes html
get_shark_data html
get_shark_datasets html
get_shark_options html
get_shark_statistics html
get_shark_table_counts html
get_toxin_list html
get_worms_classification html
get_worms_records html
get_worms_records_name html
get_worms_taxonomy_tree html
ifcb_is_near_land html
ifcb_which_basin html
is_in_dyntaxa html
load_shark4r_fields html
load_shark4r_stats html
load_station_bundle html
lookup_xy html
match_algaebase html
match_algaebase_genus html
match_algaebase_species html
match_algaebase_taxa html
match_dyntaxa html
match_dyntaxa_taxa html
match_station html
match_taxon_name html
match_worms_taxa html
match_wormstaxa html
nominal_station html
parse_scientific_names html
plot_map_leaflet html
plot_map_leaflet_deliv html
positions_are_near_land html
read_ptbx html
read_shark html
read_shark_deliv html
run_qc_app html
scatterplot html
shark_read html
shark_read_deliv html
shark_read_deliv_xls html
shark_read_zip html
translate_shark_datatype html
update_dyntaxa_taxonomy html
update_worms_taxonomy html
which_basin html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SHARK4R)