* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SCIntRuler’ ...
** this is package ‘SCIntRuler’ version ‘0.99.8’
** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmXKXXX/R.INSTALL1177d4648eba91/SCIntRuler/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c crossdist.cpp -o crossdist.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SCIntRuler.so RcppExports.o crossdist.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmXKXXX/R.INSTALL1177d4648eba91/SCIntRuler/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmXKXXX/R.INSTALL1177d4648eba91/SCIntRuler/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmXKXXX/R.INSTALL1177d4648eba91/SCIntRuler/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SCIntRuler/00new/SCIntRuler/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SCIntRuler’
    finding HTML links ... done
    CalcuSCIR                               html  
    FindCell                                html  
    FindNNDist                              html  
    FindNNDistC                             html  
    GetCluster                              html  
    NormData                                html  
    PermTest                                html  
    PlotSCIR                                html  
    SCEtoSeurat                             html  
    SCIntRuler-package                      html  
    SummCluster                             html  
    crossdist                               html  
    sim_data_sce                            html  
    sim_result                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SCIntRuler)