* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RprobitB’ ...
** this is package ‘RprobitB’ version ‘1.2.0’
** package ‘RprobitB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-5) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdy4AAO/R.INSTALL23e5664ba86542/RprobitB/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_sampler.cpp -o gibbs_sampler.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include/oeli_RcppExports.h:7,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include/oeli.h:7,
from gibbs_sampler.cpp:3:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c test-gibbs_sampler.cpp -o test-gibbs_sampler.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include/oeli_RcppExports.h:7,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include/oeli.h:7,
from gibbs_sampler.h:4,
from test-gibbs_sampler.cpp:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oeli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RprobitB.so RcppExports.o gibbs_sampler.o test-gibbs_sampler.o test-runner.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdy4AAO/R.INSTALL23e5664ba86542/RprobitB/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdy4AAO/R.INSTALL23e5664ba86542/RprobitB/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdy4AAO/R.INSTALL23e5664ba86542/RprobitB/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RprobitB/00new/RprobitB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘RprobitB’
finding HTML links ... done
R_hat html
RprobitB-package html
RprobitB_data html
RprobitB_fit html
RprobitB_gibbs_samples_statistics html
RprobitB_latent_classes html
RprobitB_normalization html
RprobitB_parameter html
WAIC html
as_cov_names html
check_form html
check_prior html
choice_probabilities html
classification html
coef.RprobitB_fit html
compute_choice_probabilities html
compute_p_si html
cov_mix html
create_lagged_cov html
d_to_gamma html
draw_from_prior html
filter_gibbs_samples html
fit_model html
get_cov html
gibbs_sampler html
ll_ordered html
missing_covariates html
mml html
mode_approx html
model_selection html
npar html
overview_effects html
parameter_labels html
plot.RprobitB_fit html
plot_acf html
plot_class_allocation html
plot_class_seq html
plot_mixture_contour html
plot_mixture_marginal html
plot_roc html
plot_trace html
point_estimates html
posterior_pars html
pred_acc html
predict.RprobitB_fit html
preference_flip html
prepare_data html
sample_allocation html
simulate_choices html
sufficient_statistics html
train_choice html
train_test html
transform html
transform_gibbs_samples html
transform_parameter html
update.RprobitB_fit html
update_Omega html
update_Omega_c html
update_Sigma html
update_U html
update_U_ranked html
update_b html
update_b_c html
update_classes_dp html
update_classes_wb html
update_coefficient html
update_d html
update_m html
update_s html
update_z html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RprobitB)