* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Rlibeemd’ ...
** package ‘Rlibeemd’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp7BQJ3C/R.INSTALL1f9da523dd6606/Rlibeemd/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bemd.c -o bemd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bemdR.cpp -o bemdR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ceemdan.c -o ceemdan.o
ceemdan.c: In function ‘ceemdan’:
ceemdan.c:71: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
71 | #pragma omp parallel
|
ceemdan.c:84: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas]
84 | #pragma omp single
|
ceemdan.c:93: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
93 | #pragma omp for
|
ceemdan.c:114: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
114 | #pragma omp parallel
|
ceemdan.c:123: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
123 | #pragma omp for
|
ceemdan.c:126: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
126 | #pragma omp flush(sift_err)
|
ceemdan.c:144: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
144 | #pragma omp flush(sift_err)
|
ceemdan.c:158: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
158 | #pragma omp flush(sift_err)
|
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ceemdanR.cpp -o ceemdanR.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c eemdR.cpp -o eemdR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eemd_routine.c -o eemd_routine.o
eemd_routine.c: In function ‘eemd’:
eemd_routine.c:63: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
63 | #pragma omp parallel
|
eemd_routine.c:76: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas]
76 | #pragma omp single
|
eemd_routine.c:91: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
91 | #pragma omp for
|
eemd_routine.c:94: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
94 | #pragma omp flush(emd_err)
|
eemd_routine.c:112: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
112 | #pragma omp flush(emd_err)
|
eemd_routine.c:113: warning: ignoring ‘#pragma omp atomic’ [-Wunknown-pragmas]
113 | #pragma omp atomic
|
eemd_routine.c:121: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas]
121 | #pragma omp single
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c emd.c -o emd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c emd_num_imfsR.cpp -o emd_num_imfsR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error.c -o error.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extrema.c -o extrema.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c extremaR.cpp -o extremaR.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gslErrorHandlerOff.cpp -o gslErrorHandlerOff.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c printError.cpp -o printError.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spline.c -o spline.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c version.c -o version.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c workspace.c -o workspace.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Rlibeemd.so RcppExports.o bemd.o bemdR.o ceemdan.o ceemdanR.o eemdR.o eemd_routine.o emd.o emd_num_imfsR.o error.o extrema.o extremaR.o gslErrorHandlerOff.o printError.o spline.o version.o workspace.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp7BQJ3C/R.INSTALL1f9da523dd6606/Rlibeemd/src'
make[1]: Entering directory '/tmp/Rtmp7BQJ3C/R.INSTALL1f9da523dd6606/Rlibeemd/src'
make[1]: Leaving directory '/tmp/Rtmp7BQJ3C/R.INSTALL1f9da523dd6606/Rlibeemd/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rlibeemd/00new/Rlibeemd/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Rlibeemd’
finding HTML links ... done
ECG html
Rlibeemd html
bemd html
ceemdan html
eemd html
emd html
extrema html
float html
nIMFs html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rlibeemd)