* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Rlabkey’ ...
** package ‘Rlabkey’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpflAIO2/R.INSTALLac1a31e9ef4d3/Rlabkey/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init.c -o R_init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c listToMatrix.cpp -o listToMatrix.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Rlabkey.so R_init.o RcppExports.o listToMatrix.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpflAIO2/R.INSTALLac1a31e9ef4d3/Rlabkey/src'
make[1]: Entering directory '/tmp/RtmpflAIO2/R.INSTALLac1a31e9ef4d3/Rlabkey/src'
make[1]: Leaving directory '/tmp/RtmpflAIO2/R.INSTALLac1a31e9ef4d3/Rlabkey/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rlabkey/00new/Rlabkey/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Rlabkey’
finding HTML links ... done
Rlabkey-package html
getFolderPath html
getLookups html
getRows html
getSchema html
getSession html
labkey.acceptSelfSignedCerts html
labkey.curlOptions html
labkey.deleteRows html
labkey.domain.FILTER_TYPES html
labkey.domain.create html
labkey.domain.createAndLoad html
labkey.domain.createConditionalFormat html
labkey.domain.createConditionalFormatQueryFilter
html
labkey.domain.createDesign html
labkey.domain.createIndices html
labkey.domain.drop html
labkey.domain.get html
labkey.domain.inferFields html
labkey.domain.save html
labkey.executeSql html
labkey.experiment.SAMPLE_DERIVATION_PROTOCOL
html
labkey.experiment.createData html
labkey.experiment.createMaterial html
labkey.experiment.createRun html
labkey.experiment.saveBatch html
labkey.experiment.saveRuns html
labkey.getBaseUrl html
labkey.getDefaultViewDetails html
labkey.getFolders html
labkey.getLookupDetails html
labkey.getModuleProperty html
labkey.getQueries html
labkey.getQueryDetails html
labkey.getQueryViews html
labkey.getRequestOptions html
labkey.getSchemas html
labkey.importRows html
labkey.insertRows html
labkey.makeRemotePath html
labkey.moveRows html
labkey.pipeline.getFileStatus html
labkey.pipeline.getPipelineContainer html
labkey.pipeline.getProtocols html
labkey.pipeline.startAnalysis html
labkey.provenance.addRecordingStep html
labkey.provenance.createProvenanceParams
html
labkey.provenance.startRecording html
labkey.provenance.stopRecording html
labkey.query.import html
labkey.rstudio.initRStudio html
labkey.rstudio.initReport html
labkey.rstudio.initSession html
labkey.rstudio.isInitialized html
labkey.rstudio.saveReport html
labkey.saveBatch html
labkey.security.createContainer html
labkey.security.deleteContainer html
labkey.security.getContainers html
labkey.security.impersonateUser html
labkey.security.moveContainer html
labkey.security.renameContainer html
labkey.security.stopImpersonating html
labkey.selectRows html
labkey.setCurlOptions html
labkey.setDebugMode html
labkey.setDefaults html
labkey.setModuleProperty html
labkey.setWafEncoding html
labkey.storage.create html
labkey.storage.delete html
labkey.storage.update html
labkey.transform.getRunPropertyValue html
labkey.transform.readRunPropertiesFile
html
labkey.truncateTable html
labkey.updateRows html
labkey.webdav.delete html
labkey.webdav.downloadFolder html
labkey.webdav.get html
labkey.webdav.listDir html
labkey.webdav.mkDir html
labkey.webdav.mkDirs html
labkey.webdav.pathExists html
labkey.webdav.put html
labkey.whoAmI html
lsFolders html
lsProjects html
lsSchemas html
makeFilter html
saveResults html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rlabkey)