* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘Rhpc’ ... ** this is package ‘Rhpc’ version ‘0.26.5’ ** package ‘Rhpc’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-16 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-16 accepts -g... yes checking for gcc-16 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sched.h... yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... yes checking for sched_getscheduler... yes checking for dladdr... yes checking libR check... yes checking for mpicc... mpicc checking Compiling of MPI C programs... yes checking Linking of MPI C programs... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/common/Makefile config.status: creating src/worker/Makefile config.status: creating src/worker/Rhpc config.status: creating src/worker/RhpcSpawn config.status: creating src/common/config.h ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/common' rm -f RhpcSerialize.o RhpcMS.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/common' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/worker' make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/worker' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/common' gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcSerialize.c -o RhpcSerialize.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcMS.c -o RhpcMS.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/common' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/worker' gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I.. -I../common -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcWorker.c -o RhpcWorker.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I.. -I../common -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcWorker_LapplyLB.c -o RhpcWorker_LapplyLB.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I.. -I../common -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcWorker_Lapplyseq.c -o RhpcWorker_Lapplyseq.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I.. -I../common -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcWorker_WorkerCall.c -o RhpcWorker_WorkerCall.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I.. -I../common -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native RhpcWorker.o RhpcWorker_LapplyLB.o RhpcWorker_Lapplyseq.o RhpcWorker_WorkerCall.o ../common/RhpcSerialize.o ../common/RhpcMS.o -o RhpcWorker -L"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib" -lR -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -Wl,--export-dynamic -fopenmp -Wl,-O1 -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n chmod ugo+x Rhpc chmod ugo+x RhpcSpawn cp -p Rhpc /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rhpc/00new/Rhpc cp -p RhpcSpawn /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rhpc/00new/Rhpc cp -p RhpcWorker /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rhpc/00new/Rhpc make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src/worker' gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rhpc_init.c -o Rhpc_init.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcMPI.c -o RhpcMPI.o RhpcMPI.c: In function ‘Rhpc_mpi_initialize’: RhpcMPI.c:242:9: warning: unused variable ‘dls’ [-Wunused-variable] 242 | void *dls = NULL; | ^~~ gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcMPIWorkerCall.c -o RhpcMPIWorkerCall.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcMPIlapplyLB.c -o RhpcMPIlapplyLB.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RhpcMPIlapplyseq.c -o RhpcMPIlapplyseq.o gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Rhpc.so Rhpc_init.o RhpcMPI.o common/RhpcSerialize.o common/RhpcMS.o RhpcMPIWorkerCall.o RhpcMPIlapplyLB.o RhpcMPIlapplyseq.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprnqJgs/R.INSTALL268d221773e7fe/Rhpc/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rhpc/00new/Rhpc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhpc’ finding HTML links ... done Rhpc-package html Rhpc_EvalQ html Rhpc_Export html Rhpc_apply html Rhpc_enquote html Rhpc_finalize html Rhpc_getHandle html Rhpc_initialize html Rhpc_lapply html Rhpc_lapplyLB html Rhpc_numberOfWorker html Rhpc_sapply html Rhpc_sapplyLB html Rhpc_serialize html Rhpc_setupRNG html Rhpc_splitList html Rhpc_worker_call html Rhpc_worker_noback html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rhpc)