* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Rfuzzycoco’ ...
** this is package ‘Rfuzzycoco’ version ‘0.1.0’
** package ‘Rfuzzycoco’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH5PAmY/R.INSTALL8cae5198c8768/Rfuzzycoco/src'
OBJECTS=RcppExports.o df_io.o fuzzy_coco_modules.o list_io.o rcpp_fuzzy_coco.o fuzzycoco/src/bitarray.o fuzzycoco/src/coevolution_engine.o fuzzycoco/src/coevolution_fitness.o fuzzycoco/src/crossover_method.o fuzzycoco/src/dataframe.o fuzzycoco/src/evolution_engine.o fuzzycoco/src/file_utils.o fuzzycoco/src/fuzzy_coco.o fuzzycoco/src/fuzzy_coco_codec.o fuzzycoco/src/fuzzy_coco_engine.o fuzzycoco/src/fuzzy_coco_fitness.o fuzzycoco/src/fuzzy_coco_params.o fuzzycoco/src/fuzzy_default_rule.o fuzzycoco/src/fuzzy_rule.o fuzzycoco/src/fuzzy_system.o fuzzycoco/src/fuzzy_system_fitness.o fuzzycoco/src/fuzzy_system_metrics.o fuzzycoco/src/fuzzy_system_metrics_computer.o fuzzycoco/src/fuzzy_variable.o fuzzycoco/src/fuzzy_variables_db.o fuzzycoco/src/genome_codec.o fuzzycoco/src/mutation_method.o fuzzycoco/src/named_list.o fuzzycoco/src/selection_method.o fuzzycoco/src/string_utils.o
SOURCES=RcppExports.cpp df_io.cpp fuzzy_coco_modules.cpp list_io.cpp rcpp_fuzzy_coco.cpp fuzzycoco/src/bitarray.cpp fuzzycoco/src/coevolution_engine.cpp fuzzycoco/src/coevolution_fitness.cpp fuzzycoco/src/crossover_method.cpp fuzzycoco/src/dataframe.cpp fuzzycoco/src/evolution_engine.cpp fuzzycoco/src/file_utils.cpp fuzzycoco/src/fuzzy_coco.cpp fuzzycoco/src/fuzzy_coco_codec.cpp fuzzycoco/src/fuzzy_coco_engine.cpp fuzzycoco/src/fuzzy_coco_fitness.cpp fuzzycoco/src/fuzzy_coco_params.cpp fuzzycoco/src/fuzzy_default_rule.cpp fuzzycoco/src/fuzzy_rule.cpp fuzzycoco/src/fuzzy_system.cpp fuzzycoco/src/fuzzy_system_fitness.cpp fuzzycoco/src/fuzzy_system_metrics.cpp fuzzycoco/src/fuzzy_system_metrics_computer.cpp fuzzycoco/src/fuzzy_variable.cpp fuzzycoco/src/fuzzy_variables_db.cpp fuzzycoco/src/genome_codec.cpp fuzzycoco/src/mutation_method.cpp fuzzycoco/src/named_list.cpp fuzzycoco/src/selection_method.cpp fuzzycoco/src/string_utils.cpp
MY_CXXFLAGS=-fpic -O2 -Wall -pedantic -mtune=native
ALL_CXXFLAGS= -fpic -g -O2 -Wall -pedantic -mtune=native
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c df_io.cpp -o df_io.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzy_coco_modules.cpp -o fuzzy_coco_modules.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c list_io.cpp -o list_io.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c rcpp_fuzzy_coco.cpp -o rcpp_fuzzy_coco.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/bitarray.cpp -o fuzzycoco/src/bitarray.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/coevolution_engine.cpp -o fuzzycoco/src/coevolution_engine.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/coevolution_fitness.cpp -o fuzzycoco/src/coevolution_fitness.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/crossover_method.cpp -o fuzzycoco/src/crossover_method.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/dataframe.cpp -o fuzzycoco/src/dataframe.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/evolution_engine.cpp -o fuzzycoco/src/evolution_engine.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/file_utils.cpp -o fuzzycoco/src/file_utils.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_coco.cpp -o fuzzycoco/src/fuzzy_coco.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_coco_codec.cpp -o fuzzycoco/src/fuzzy_coco_codec.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_coco_engine.cpp -o fuzzycoco/src/fuzzy_coco_engine.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_coco_fitness.cpp -o fuzzycoco/src/fuzzy_coco_fitness.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_coco_params.cpp -o fuzzycoco/src/fuzzy_coco_params.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_default_rule.cpp -o fuzzycoco/src/fuzzy_default_rule.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_rule.cpp -o fuzzycoco/src/fuzzy_rule.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_system.cpp -o fuzzycoco/src/fuzzy_system.o
fuzzycoco/src/fuzzy_system.cpp: In member function ‘void fuzzy_coco::FuzzySystem::computeRulesImplications(const std::vector<double>&, fuzzy_coco::Matrix<double>&) const’:
fuzzycoco/src/fuzzy_system.cpp:248:13: warning: unused variable ‘nb_vars’ [-Wunused-variable]
248 | const int nb_vars = getDB().getNbOutputVars();
| ^~~~~~~
fuzzycoco/src/fuzzy_system.cpp:249:13: warning: unused variable ‘nb_sets’ [-Wunused-variable]
249 | const int nb_sets = getDB().getNbOutputSets();
| ^~~~~~~
fuzzycoco/src/fuzzy_system.cpp: In member function ‘void fuzzy_coco::FuzzySystem::addDefaultRulesImplications(const std::vector<int>&, const std::vector<double>&, fuzzy_coco::Matrix<double>&) const’:
fuzzycoco/src/fuzzy_system.cpp:277:16: warning: unused variable ‘current_level’ [-Wunused-variable]
277 | double current_level = results[var_idx][set_idx];
| ^~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_system_fitness.cpp -o fuzzycoco/src/fuzzy_system_fitness.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_system_metrics.cpp -o fuzzycoco/src/fuzzy_system_metrics.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_system_metrics_computer.cpp -o fuzzycoco/src/fuzzy_system_metrics_computer.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_variable.cpp -o fuzzycoco/src/fuzzy_variable.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/fuzzy_variables_db.cpp -o fuzzycoco/src/fuzzy_variables_db.o
fuzzycoco/src/fuzzy_variables_db.cpp: In member function ‘fuzzy_coco::FuzzyVariablesDB fuzzy_coco::FuzzyVariablesDB::subset(const std::vector<int>&, const std::vector<int>&) const’:
fuzzycoco/src/fuzzy_variables_db.cpp:134:13: warning: unused variable ‘nbin’ [-Wunused-variable]
134 | const int nbin = getNbInputVars();
| ^~~~
fuzzycoco/src/fuzzy_variables_db.cpp:140:13: warning: unused variable ‘nbout’ [-Wunused-variable]
140 | const int nbout = getNbOutputVars();
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/genome_codec.cpp -o fuzzycoco/src/genome_codec.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/mutation_method.cpp -o fuzzycoco/src/mutation_method.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/named_list.cpp -o fuzzycoco/src/named_list.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/selection_method.cpp -o fuzzycoco/src/selection_method.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Ifuzzycoco/src -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -O2 -Wall -pedantic -mtune=native -c fuzzycoco/src/string_utils.cpp -o fuzzycoco/src/string_utils.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Rfuzzycoco.so RcppExports.o df_io.o fuzzy_coco_modules.o list_io.o rcpp_fuzzy_coco.o fuzzycoco/src/bitarray.o fuzzycoco/src/coevolution_engine.o fuzzycoco/src/coevolution_fitness.o fuzzycoco/src/crossover_method.o fuzzycoco/src/dataframe.o fuzzycoco/src/evolution_engine.o fuzzycoco/src/file_utils.o fuzzycoco/src/fuzzy_coco.o fuzzycoco/src/fuzzy_coco_codec.o fuzzycoco/src/fuzzy_coco_engine.o fuzzycoco/src/fuzzy_coco_fitness.o fuzzycoco/src/fuzzy_coco_params.o fuzzycoco/src/fuzzy_default_rule.o fuzzycoco/src/fuzzy_rule.o fuzzycoco/src/fuzzy_system.o fuzzycoco/src/fuzzy_system_fitness.o fuzzycoco/src/fuzzy_system_metrics.o fuzzycoco/src/fuzzy_system_metrics_computer.o fuzzycoco/src/fuzzy_variable.o fuzzycoco/src/fuzzy_variables_db.o fuzzycoco/src/genome_codec.o fuzzycoco/src/mutation_method.o fuzzycoco/src/named_list.o fuzzycoco/src/selection_method.o fuzzycoco/src/string_utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH5PAmY/R.INSTALL8cae5198c8768/Rfuzzycoco/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH5PAmY/R.INSTALL8cae5198c8768/Rfuzzycoco/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH5PAmY/R.INSTALL8cae5198c8768/Rfuzzycoco/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rfuzzycoco/00new/Rfuzzycoco/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Rfuzzycoco’
finding HTML links ... done
Rfuzzycoco-package html
compute_optimal_quantile_fuzzy_set_positions
html
evaluate.fuzzycoco_fit html
evaluate_fuzzy_system html
example_iris36 html
example_iris_binary_categorical html
example_mtcars html
fit.fuzzycoco_model html
fit_to_df html
fit_xy.fuzzycoco_model html
fs_rules_to_df html
fs_used_vars_to_df html
fuzzy_coco_parsnip html
fuzzy_coco_parsnip_wrapper html
fuzzy_coco_systematic_fit html
fuzzycoco html
fuzzycoco_fit_df_hybrid html
params html
predict.fuzzycoco_fit html
predict_fuzzy_system html
reexports html
shared_params html
stop_engine_if_stalling html
stop_engine_on_first_of html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rfuzzycoco)