* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Rdimtools’ ...
** package ‘Rdimtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/Rtmpck8iE6/R.INSTALL3b5235507cc15c/Rdimtools/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Rdimtools_auxiliary.cpp -o Rdimtools_auxiliary.o
Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab(const arma::mat&, const arma::colvec&, arma::colvec&, double, int, const arma::mat&)’:
Rdimtools_auxiliary.cpp:652:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable]
652 | double resid = 0;
| ^~~~~
Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab_sparse(arma::sp_mat, arma::sp_mat, arma::colvec&, double, int, arma::sp_mat)’:
Rdimtools_auxiliary.cpp:769:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable]
769 | double resid = 0;
| ^~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c example_class.cpp -o example_class.o
example_class.cpp: In member function ‘arma::mat ClNLproc::MainFunc(arma::mat&)’:
example_class.cpp:31:9: warning: unused variable ‘N’ [-Wunused-variable]
31 | int N = X.n_rows;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_estimation.cpp -o methods_estimation.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_handytools.cpp -o methods_handytools.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_linear.cpp -o methods_linear.o
methods_linear.cpp: In function ‘arma::vec method_spufs(arma::mat&, arma::mat, double, double, double)’:
methods_linear.cpp:780:13: warning: unused variable ‘n’ [-Wunused-variable]
780 | const int n = X.n_rows;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_nonlinear.cpp -o methods_nonlinear.o
methods_nonlinear.cpp: In function ‘Rcpp::List main_bmds(arma::mat, arma::mat, double, double, double, int, double, bool, arma::vec)’:
methods_nonlinear.cpp:836:7: warning: unused variable ‘accept’ [-Wunused-variable]
836 | int accept = 0;
| ^~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_computation.cpp -o ver1_computation.o
ver1_computation.cpp: In function ‘arma::mat v2aux_pca(arma::mat&, int)’:
ver1_computation.cpp:12:7: warning: unused variable ‘P’ [-Wunused-variable]
12 | int P = X.n_cols;
| ^
ver1_computation.cpp: In function ‘arma::mat v2aux_pdist(arma::mat&)’:
ver1_computation.cpp:30:7: warning: unused variable ‘P’ [-Wunused-variable]
30 | int P = X.n_cols;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_feature.cpp -o ver1_feature.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_linear.cpp -o ver1_linear.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_nonlinear.cpp -o ver1_nonlinear.o
ver1_nonlinear.cpp: In function ‘Rcpp::List dt_mmds(arma::mat&, int, int, double)’:
ver1_nonlinear.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
98 | if ((ndim < 1)||(ndim >= X.n_cols)){
| ~~~~~^~~~~~~~~~~
ver1_nonlinear.cpp:97:7: warning: unused variable ‘P’ [-Wunused-variable]
97 | int P = X.n_cols;
| ^
ver1_nonlinear.cpp: In function ‘Rcpp::List dt_rpca(arma::mat&, double, double, int, double)’:
ver1_nonlinear.cpp:394:7: warning: unused variable ‘N’ [-Wunused-variable]
394 | int N = X.n_rows;
| ^
ver1_nonlinear.cpp:395:7: warning: unused variable ‘P’ [-Wunused-variable]
395 | int P = X.n_cols;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maotai/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_utility.cpp -o ver1_utility.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Rdimtools.so RcppExports.o Rdimtools_auxiliary.o example_class.o methods_estimation.o methods_handytools.o methods_linear.o methods_nonlinear.o ver1_computation.o ver1_feature.o ver1_linear.o ver1_nonlinear.o ver1_utility.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpck8iE6/R.INSTALL3b5235507cc15c/Rdimtools/src'
make[1]: Entering directory '/tmp/Rtmpck8iE6/R.INSTALL3b5235507cc15c/Rdimtools/src'
make[1]: Leaving directory '/tmp/Rtmpck8iE6/R.INSTALL3b5235507cc15c/Rdimtools/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Rdimtools/00new/Rdimtools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Rdimtools’
finding HTML links ... done
aux_gensamples html
aux_graphnbd html
aux_kernelcov html
aux_pkgstat html
aux_preprocess html
aux_shortestpath html
estimate_Ustat html
estimate_boxcount html
estimate_clustering html
estimate_correlation html
estimate_danco html
estimate_gdistnn html
estimate_incisingball html
estimate_made html
estimate_mindkl html
estimate_mindml html
estimate_mle1 html
estimate_mle2 html
estimate_nearneighbor1 html
estimate_nearneighbor2 html
estimate_packing html
estimate_pcathr html
estimate_twonn html
feature_CSCORE html
feature_CSCOREG html
feature_DISR html
feature_ENET html
feature_FOSMOD html
feature_FSCORE html
feature_LASSO html
feature_LSCORE html
feature_LSDF html
feature_LSLS html
feature_LSPE html
feature_MCFS html
feature_MIFS html
feature_NRSR html
feature_PFA html
feature_PROCRUSTES html
feature_RSR html
feature_SPECS html
feature_SPECU html
feature_SPUFS html
feature_UDFS html
feature_UGFS html
feature_UWDFS html
feature_WDFS html
iris html
linear_ADR html
linear_AMMC html
linear_ANMM html
linear_ASI html
linear_BPCA html
linear_CCA html
linear_CNPE html
linear_CRP html
linear_DAGDNE html
linear_DNE html
linear_DSPP html
linear_ELDE html
linear_ELPP2 html
linear_ESLPP html
linear_EXTLPP html
linear_FA html
linear_FSSEM html
linear_ICA html
linear_ISOPROJ html
linear_KMVP html
linear_KUDP html
linear_LDA html
linear_LDAKM html
linear_LDE html
linear_LDP html
linear_LEA html
linear_LFDA html
linear_LLP html
linear_LLTSA html
linear_LMDS html
linear_LPCA2006 html
linear_LPE html
linear_LPFDA html
linear_LPMIP html
linear_LPP html
linear_LQMI html
linear_LSDA html
linear_LSIR html
linear_LSPP html
linear_MDS html
linear_MFA html
linear_MLIE html
linear_MMC html
linear_MMP html
linear_MMSD html
linear_MODP html
linear_MSD html
linear_MVP html
linear_NOLPP html
linear_NONPP html
linear_NPCA html
linear_NPE html
linear_ODP html
linear_OLDA html
linear_OLPP html
linear_ONPP html
linear_OPLS html
linear_PCA html
linear_PFLPP html
linear_PLS html
linear_PPCA html
linear_RLDA html
linear_RNDPROJ html
linear_RPCAG html
linear_RSIR html
linear_SAMMC html
linear_SAVE html
linear_SDA html
linear_SDLPP html
linear_SIR html
linear_SLPE html
linear_SLPP html
linear_SPC html
linear_SPCA html
linear_SPP html
linear_SSLDP html
linear_UDP html
linear_ULDA html
nonlinear_BMDS html
nonlinear_CGE html
nonlinear_CISOMAP html
nonlinear_CRCA html
nonlinear_CRDA html
nonlinear_DM html
nonlinear_DPPCA html
nonlinear_DVE html
nonlinear_FastMap html
nonlinear_HYDRA html
nonlinear_IDMAP html
nonlinear_ILTSA html
nonlinear_ISOMAP html
nonlinear_ISPE html
nonlinear_KECA html
nonlinear_KLDE html
nonlinear_KLFDA html
nonlinear_KLSDA html
nonlinear_KMFA html
nonlinear_KMMC html
nonlinear_KPCA html
nonlinear_KQMI html
nonlinear_KSDA html
nonlinear_LAMP html
nonlinear_LAPEIG html
nonlinear_LISOMAP html
nonlinear_LLE html
nonlinear_LLLE html
nonlinear_LTSA html
nonlinear_MMDS html
nonlinear_MVE html
nonlinear_MVU html
nonlinear_NNP html
nonlinear_PHATE html
nonlinear_PLP html
nonlinear_REE html
nonlinear_RPCA html
nonlinear_SAMMON html
nonlinear_SNE html
nonlinear_SPE html
nonlinear_SPLAPEIG html
nonlinear_SPMDS html
nonlinear_TSNE html
oos_LINPROJ html
usps html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rdimtools)