* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RcppHMM’ ...
** this is package ‘RcppHMM’ version ‘1.2.2.1’
** package ‘RcppHMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV5gvJD/R.INSTALL2eb5cc42467972/RcppHMM/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c HMM.cpp -o HMM.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c HMMpoisson.cpp -o HMMpoisson.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MultiGHMM.cpp -o MultiGHMM.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c RcppHMM_init.c -o RcppHMM_init.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c exportFile.cpp -o exportFile.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mvnorm.cpp -o mvnorm.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vHMM.cpp -o vHMM.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RcppHMM.so HMM.o HMMpoisson.o MultiGHMM.o RcppHMM_init.o exportFile.o mvnorm.o vHMM.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV5gvJD/R.INSTALL2eb5cc42467972/RcppHMM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV5gvJD/R.INSTALL2eb5cc42467972/RcppHMM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV5gvJD/R.INSTALL2eb5cc42467972/RcppHMM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RcppHMM/00new/RcppHMM/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘RcppHMM’
    finding HTML links ... done
    Changes                                 html  
    RcppHMM-package                         html  
    evaluation                              html  
    forwardBackward                         html  
    generateObservations                    html  
    initGHMM                                html  
    initHMM                                 html  
    initPHMM                                html  
    learnEM                                 html  
    loglikelihood                           html  
    setNames                                html  
    setParameters                           html  
    verifyModel                             html  
    viterbi                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppHMM)