* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RZooRoH’ ...
** this is package ‘RZooRoH’ version ‘0.4.1’
** package ‘RZooRoH’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb1wZny/R.INSTALL3679c86808400f/RZooRoH/src'
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  Freqem_AD.f90 -o Freqem_AD.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  Freqem_GP.f90 -o Freqem_GP.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  Freqem_PL.f90 -o Freqem_PL.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c RZooRoH_init.c -o RZooRoH_init.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoolayerFB.f90 -o zoolayerFB.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoolayerViterbi.f90 -o zoolayerViterbi.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoolayerlik.f90 -o zoolayerlik.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoosumlayerFB.f90 -o zoosumlayerFB.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoosumlayerFB2.f90 -o zoosumlayerFB2.o
zoosumlayerFB2.f90:292:12:

  292 | integer ::i3
      |            ^
Warning: ‘i3’ may be used uninitialized [-Wmaybe-uninitialized]
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoosumlayerViterbi.f90 -o zoosumlayerViterbi.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoosumlayerViterbi2.f90 -o zoosumlayerViterbi2.o
zoosumlayerViterbi2.f90:244:12:

  244 | integer ::i3
      |            ^
Warning: ‘i3’ may be used uninitialized [-Wmaybe-uninitialized]
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoosumlayerlik.f90 -o zoosumlayerlik.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  zoosumlayerlik2.f90 -o zoosumlayerlik2.o
zoosumlayerlik2.f90:189:61:

  189 |   alpha_float(1)=alpha_up(1)*P7(1,d_i)+alpha(1,k-1)*P6(1,d_i)
      |                                                             ^
Warning: ‘i3’ may be used uninitialized [-Wmaybe-uninitialized]
zoosumlayerlik2.f90:223:12:

  223 | integer ::i3
      |            ^
note: ‘i3’ was declared here
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RZooRoH.so Freqem_AD.o Freqem_GP.o Freqem_PL.o RZooRoH_init.o zoolayerFB.o zoolayerViterbi.o zoolayerlik.o zoosumlayerFB.o zoosumlayerFB2.o zoosumlayerViterbi.o zoosumlayerViterbi2.o zoosumlayerlik.o zoosumlayerlik2.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb1wZny/R.INSTALL3679c86808400f/RZooRoH/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb1wZny/R.INSTALL3679c86808400f/RZooRoH/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb1wZny/R.INSTALL3679c86808400f/RZooRoH/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RZooRoH/00new/RZooRoH/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘RZooRoH’
    finding HTML links ... done
    BBB_NMP_GP_subset                       html  
    BBB_NMP_ad_subset                       html  
    BBB_NMP_pl_subset                       html  
    BBB_PE_gt_subset                        html  
    BBB_samples                             html  
    RZooRoH-package                         html  
    cumhbd                                  html  
    cumkin                                  html  
    genoex                                  html  
    genosim                                 html  
    hbd1                                    html  
    hbd2                                    html  
    kintaf_mix4l                            html  
    map1                                    html  
    merge_zres                              html  
    predhbd                                 html  
    probhbd                                 html  
    rara_mix10l                             html  
    realized                                html  
    rohbd                                   html  
    soay_mix10l                             html  
    typs                                    html  
    typsfrq                                 html  
    update_zres                             html  
    wilt_mix10l                             html  
    zoodata                                 html  
    zookin                                  html  
    zoomodel                                html  
    zooplot_hbdseg                          html  
    zooplot_individuals                     html  
    zooplot_partitioning                    html  
    zooplot_prophbd                         html  
    zoorun                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RZooRoH)