* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RScelestial’ ...
** this is package ‘RScelestial’ version ‘1.0.4’
** package ‘RScelestial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprsiMPL/R.INSTALLe22d1f3cdece/RScelestial/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c scelestial.cc -o scelestial.o
In file included from scelestial.cc:5:
scelestial.h: In function ‘void reRootEdgeSet(std::vector<EdgeWeight>&, const std::vector<int>&, int)’:
scelestial.h:1222:18: warning: unused variable ‘vv’ [-Wunused-variable]
 1222 |         for (int vv: v) {
      |                  ^~
scelestial.h:1230:20: warning: unused variable ‘ee’ [-Wunused-variable]
 1230 |         for (auto& ee: e) {
      |                    ^~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RScelestial.so RcppExports.o scelestial.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprsiMPL/R.INSTALLe22d1f3cdece/RScelestial/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprsiMPL/R.INSTALLe22d1f3cdece/RScelestial/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprsiMPL/R.INSTALLe22d1f3cdece/RScelestial/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RScelestial/00new/RScelestial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘RScelestial’
    finding HTML links ... done
    Li                                      html  
    RScelestial                             html  
    as.mutation.matrix                      html  
    as.ten.state.matrix                     html  
    as.ten.state.matrix.from.node.seq       html  
    distance.matrix.scelestial              html  
    distance.matrix.tree                    html  
    distance.matrix.true.tree               html  
    dot-scelestial                          html  
    dot-synthesis                           html  
    my.dfs                                  html  
    my.general.dfs                          html  
    read.sequence.table                     html  
    scelestial                              html  
    synthesis                               html  
    tree.plot                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RScelestial)