* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RRF’ ...
** package ‘RRF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpxTqefK/R.INSTALL2052366a4e84f7/RRF/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o
classTree.c: In function ‘predictClassTree’:
classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized]
454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ?
| ^
classTree.c:425:22: note: ‘cbestsplit’ was declared here
425 | int m, i, j, k, *cbestsplit;
| ^~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o
regTree.c: In function ‘predictRegTree’:
regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized]
335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ?
| ^
regTree.c:308:22: note: ‘cbestsplit’ was declared here
308 | int i, j, k, m, *cbestsplit;
| ^~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o
regrf.c: In function ‘regRF’:
regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable]
64 | int flagReg;//new
| ^~~~~~~
regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable]
54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand,
| ^~~~~~
regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized]
219 | predictRegTree(xts, ntest, mdim, lDaughter + idx,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
220 | rDaughter + idx, nodestatus + idx, ytree,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
221 | upper + idx, avnode + idx,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
regrf.c:57:36: note: ‘ytree’ was declared here
57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini;
| ^~~~~
regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized]
219 | predictRegTree(xts, ntest, mdim, lDaughter + idx,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
220 | rDaughter + idx, nodestatus + idx, ytree,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
221 | upper + idx, avnode + idx,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
regrf.c:63:30: note: ‘nodexts’ was declared here
63 | int *in, *nind, *nodex, *nodexts;
| ^~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o
rf.c: In function ‘classRF’:
rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable]
110 | *tp, *wr;
| ^~
rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable]
92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
| ^~~~
rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable]
92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
| ^~~~
rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized]
437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rf.c:102:43: note: ‘oobpair’ was declared here
102 | *at, *a, *b, *mind, *nind, *jts, *oobpair;
| ^~~~~~~
rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized]
385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | errts + jb*(nclass+1), *labelts, nclts, cut);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rf.c:96:29: note: ‘nclts’ was declared here
96 | *nrightimp, *nout, *nclts, Ntree;
| ^~~~~
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c rfsub.f -o rfsub.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpxTqefK/R.INSTALL2052366a4e84f7/RRF/src'
make[1]: Entering directory '/tmp/RtmpxTqefK/R.INSTALL2052366a4e84f7/RRF/src'
make[1]: Leaving directory '/tmp/RtmpxTqefK/R.INSTALL2052366a4e84f7/RRF/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RRF/00new/RRF/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘RRF’
finding HTML links ... done
MDSplot html
RRF html
classCenter html
combine html
getTree html
grow html
importance html
imports85 html
margin html
na.roughfix html
outlier html
partialPlot html
plot.RRF html
predict.RRF html
rrfImpute html
rrfNews html
rrfcv html
treesize html
tuneRRF html
varImpPlot html
varUsed html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RRF)