* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RProtoBuf’ ...
** package ‘RProtoBuf’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
checking for g++-13 -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E
checking for gcc... gcc-13
checking whether the compiler supports GNU C... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to enable C11 features... none needed
checking whether the compiler supports GNU C++... (cached) yes
checking whether g++-13 -std=gnu++17 accepts -g... (cached) yes
checking for g++-13 -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for pkg-config... yes
checking for protoc... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for google/protobuf/stubs/common.h... yes
checking for google/protobuf/compiler/code_generator.h... yes
checking if ProtoBuf version >= 2.2.0... yes
checking for R... yes
configure: creating ./config.status
config.status: creating src/Makevars
RProtoBuf 0.4.22
================
cflags: -g -O2 -Wall -pedantic -mtune=native
libs: -lprotobuf
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpIOHjE5/R.INSTALL38a7ef39eab3fd/RProtoBuf/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConnectionCopyingInputStream.cpp -o ConnectionCopyingInputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConnectionCopyingOutputStream.cpp -o ConnectionCopyingOutputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConnectionInputStream.cpp -o ConnectionInputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConnectionOutputStream.cpp -o ConnectionOutputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DescriptorPoolLookup.cpp -o DescriptorPoolLookup.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RSourceTree.cpp -o RSourceTree.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RWarningErrorCollector.cpp -o RWarningErrorCollector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RconnectionCopyingInputStream.cpp -o RconnectionCopyingInputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ZeroCopyInputStreamWrapper.cpp -o ZeroCopyInputStreamWrapper.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ZeroCopyOutputStreamWrapper.cpp -o ZeroCopyOutputStreamWrapper.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c extensions.cpp -o extensions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c extractors.cpp -o extractors.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lookup.cpp -o lookup.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mutators.cpp -o mutators.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rprotobuf.cpp -o rprotobuf.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c streams.cpp -o streams.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_ArrayInputStream.cpp -o wrapper_ArrayInputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_ArrayOutputStream.cpp -o wrapper_ArrayOutputStream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_Descriptor.cpp -o wrapper_Descriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_EnumDescriptor.cpp -o wrapper_EnumDescriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_EnumValueDescriptor.cpp -o wrapper_EnumValueDescriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_FieldDescriptor.cpp -o wrapper_FieldDescriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_FileDescriptor.cpp -o wrapper_FileDescriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_Message.cpp -o wrapper_Message.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_MethodDescriptor.cpp -o wrapper_MethodDescriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_ServiceDescriptor.cpp -o wrapper_ServiceDescriptor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -g -O2 -Wall -pedantic -mtune=native -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper_ZeroCopyInputStream.cpp -o wrapper_ZeroCopyInputStream.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RProtoBuf.so ConnectionCopyingInputStream.o ConnectionCopyingOutputStream.o ConnectionInputStream.o ConnectionOutputStream.o DescriptorPoolLookup.o RSourceTree.o RWarningErrorCollector.o RconnectionCopyingInputStream.o ZeroCopyInputStreamWrapper.o ZeroCopyOutputStreamWrapper.o extensions.o extractors.o init.o lookup.o mutators.o rprotobuf.o streams.o wrapper_ArrayInputStream.o wrapper_ArrayOutputStream.o wrapper_Descriptor.o wrapper_EnumDescriptor.o wrapper_EnumValueDescriptor.o wrapper_FieldDescriptor.o wrapper_FileDescriptor.o wrapper_Message.o wrapper_MethodDescriptor.o wrapper_ServiceDescriptor.o wrapper_ZeroCopyInputStream.o -lprotobuf -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIOHjE5/R.INSTALL38a7ef39eab3fd/RProtoBuf/src'
make[1]: Entering directory '/tmp/RtmpIOHjE5/R.INSTALL38a7ef39eab3fd/RProtoBuf/src'
make[1]: Leaving directory '/tmp/RtmpIOHjE5/R.INSTALL38a7ef39eab3fd/RProtoBuf/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RProtoBuf/00new/RProtoBuf/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘RProtoBuf’
finding HTML links ... done
ArrayInputStream-class html
ArrayInputStream-methods html
ArrayOutputStream-class html
ArrayOutputStream-methods html
BackUp-methods html
ByteCount-methods html
ConnectionInputStream-class html
ConnectionInputStream-methods html
ConnectionOutputStream-class html
ConnectionOutputStream-methods html
Descriptor-class html
EnumDescriptor-class html
EnumValueDescriptor-class html
FieldDescriptor-class html
FileDescriptor-class html
FileInputStream-class html
FileInputStream-methods html
FileOutputStream-class html
FileOutputStream-methods html
GetErrno-methods html
Message-class html
MethodDescriptor-class html
Next-methods html
P html
RProtoBuf-package html
ServiceDescriptor-class html
SetCloseOnDelete-methods html
Skip-methods html
ZeroCopyInputStream-class html
ZeroCopyOutputStream-class html
add html
asMessage html
aslist html
bytesize html
clear html
clone html
completion html
containing_type-methods html
descriptor html
enum_type html
enum_type_count html
fetch html
field html
field_count html
fileDescriptor html
has html
isInitialized html
is_extension html
label html
merge html
name html
nested_type html
nested_type_count html
number html
read html
readASCII html
readJSON html
readProtoFiles html
serialize_pb html
set html
size html
sizegets html
swap html
type html
with html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RProtoBuf)