* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RPANDA’ ...
** package ‘RPANDA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp7w10PX/R.INSTALL39d1691a70b840/RPANDA/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_panda-covar-ou.c -o C_panda-covar-ou.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RPANDA_init.c -o RPANDA_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diversif_lognormal.c -o diversif_lognormal.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fitness.c -o fitness.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c permute.c -o permute.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RPANDA.so C_panda-covar-ou.o RPANDA_init.o diversif_lognormal.o fitness.o permute.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp7w10PX/R.INSTALL39d1691a70b840/RPANDA/src'
make[1]: Entering directory '/tmp/Rtmp7w10PX/R.INSTALL39d1691a70b840/RPANDA/src'
make[1]: Leaving directory '/tmp/Rtmp7w10PX/R.INSTALL39d1691a70b840/RPANDA/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RPANDA/00new/RPANDA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘RPANDA’
finding HTML links ... done
Anolis.data html
BGB.examples html
BICompare html
Balaenopteridae html
Calomys html
Caprimulgidae html
Caprimulgidae_ClaDS2 html
Cetacea html
Cetacea_clades html
ClaDS0_example html
CreateClassObject html
finding level-2 HTML links ... done
CreateGeoObject html
CreateGeoObject_BioGeoBEARS html
CreateGeobyClassObject html
GIC html
InfTemp html
JSDt_cluster html
JSDtree html
JSDtree_cluster html
MPhiFFT html
PhenotypicACDC-class html
PhenotypicADiag-class html
PhenotypicBM-class html
PhenotypicDD-class html
PhenotypicGMM-class html
PhenotypicModel-class html
PhenotypicOU-class html
PhenotypicPM-class html
Phocoenidae html
Phyllostomidae html
Phyllostomidae_genera html
Posdef html
RPANDA-package html
add.gts html
ancestral html
apply_prob_dtt html
build_network.BipartiteEvol html
co2 html
co2_res html
coccolithophore html
createModel html
createModelCoevolution html
d13c html
define_species.BipartiteEvol html
delineate_phylotypes html
div.models html
div.rates html
fitTipData-methods html
fitTipData html
fit_ClaDS html
fit_ClaDS0 html
fit_bd html
fit_bd_backbone html
fit_bd_backbone_c html
fit_coal_cst html
fit_coal_var html
fit_env html
fit_sgd html
fit_t_comp html
fit_t_comp_subgroup html
fit_t_env html
fit_t_env_ou html
fit_t_pl html
fit_t_standard html
foraminifera html
get.comb.shift html
get.sampling.fractions html
getDataLikelihood-methods html
getDataLikelihood html
getMAPS_ClaDS html
getMAPS_ClaDS0 html
getTipDistribution-methods html
getTipDistribution html
gic_criterion html
greenalgae html
landplant html
likelihood_bd html
likelihood_bd_backbone html
likelihood_coal_cst html
likelihood_coal_var html
likelihood_sgd html
likelihood_subgroup_model html
likelihood_t_DD html
likelihood_t_DD_geog html
likelihood_t_MC html
likelihood_t_MC_geog html
likelihood_t_env html
lines.fit_t.env html
lines.fit_t_env.ou html
make_gen.BipartiteEvol html
mantel_test html
mantel_test_nbpartners html
modelSelection-methods html
modelSelection html
mycorrhizal_network html
ostracoda html
paleodiv html
phyl.pca_pl html
phylosignal_network html
phylosignal_sub_network html
pi_estimator html
plot.fit_t.env html
plot.fit_t_env.ou html
plot_BICompare html
plot_ClaDS0_chains html
plot_ClaDS_chains html
plot_ClaDS_phylo html
plot_div.BipartiteEvol html
plot_dtt html
plot_fit_bd html
plot_fit_env html
plot_net.BipartiteEvol html
plot_phylo_comb html
plot_phylosignal_sub_network html
plot_prob_dtt html
plot_spectR html
prob_dtt html
radiolaria html
redalgae html
remove.model html
sealevel html
shift.estimates html
shifts_cetacea html
silica html
sim.BipartiteEvol html
sim.convergence.geo html
sim.divergence.geo html
sim_ClaDS html
sim_MCBD html
sim_env_bd html
sim_sgd html
sim_t_comp html
sim_t_env html
sim_t_env_ou html
sim_t_tworegime html
simul.comb.shift html
simulateTipData-methods html
simulateTipData html
spectR html
spectR_t html
taxo_cetacea html
theta_estimator html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RPANDA)