* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘RPANDA’ ... ** package ‘RPANDA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUKary9/R.INSTALL2b7fb1606b5604/RPANDA/src' gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_panda-covar-ou.c -o C_panda-covar-ou.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RPANDA_init.c -o RPANDA_init.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diversif_lognormal.c -o diversif_lognormal.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fitness.c -o fitness.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c permute.c -o permute.o gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RPANDA.so C_panda-covar-ou.o RPANDA_init.o diversif_lognormal.o fitness.o permute.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUKary9/R.INSTALL2b7fb1606b5604/RPANDA/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUKary9/R.INSTALL2b7fb1606b5604/RPANDA/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUKary9/R.INSTALL2b7fb1606b5604/RPANDA/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RPANDA/00new/RPANDA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘RPANDA’ finding HTML links ... done Anolis.data html BGB.examples html BICompare html Balaenopteridae html Calomys html Caprimulgidae html Caprimulgidae_ClaDS2 html Cetacea html Cetacea_clades html ClaDS0_example html CreateClassObject html finding level-2 HTML links ... done CreateGeoObject html CreateGeoObject_BioGeoBEARS html CreateGeobyClassObject html GIC html InfTemp html JSDt_cluster html JSDtree html JSDtree_cluster html MPhiFFT html PhenotypicACDC-class html PhenotypicADiag-class html PhenotypicBM-class html PhenotypicDD-class html PhenotypicGMM-class html PhenotypicModel-class html PhenotypicOU-class html PhenotypicPM-class html Phocoenidae html Phyllostomidae html Phyllostomidae_genera html Posdef html RPANDA-package html add.gts html ancestral html apply_prob_dtt html build_network.BipartiteEvol html co2 html co2_res html coccolithophore html createModel html createModelCoevolution html d13c html define_species.BipartiteEvol html delineate_phylotypes html div.models html div.rates html fitTipData-methods html fitTipData html fit_ClaDS html fit_ClaDS0 html fit_bd html fit_bd_backbone html fit_bd_backbone_c html fit_coal_cst html fit_coal_var html fit_env html fit_sgd html fit_t_comp html fit_t_comp_subgroup html fit_t_env html fit_t_env_ou html fit_t_pl html fit_t_standard html foraminifera html get.comb.shift html get.sampling.fractions html getDataLikelihood-methods html getDataLikelihood html getMAPS_ClaDS html getMAPS_ClaDS0 html getTipDistribution-methods html getTipDistribution html gic_criterion html greenalgae html landplant html likelihood_bd html likelihood_bd_backbone html likelihood_coal_cst html likelihood_coal_var html likelihood_sgd html likelihood_subgroup_model html likelihood_t_DD html likelihood_t_DD_geog html likelihood_t_MC html likelihood_t_MC_geog html likelihood_t_env html lines.fit_t.env html lines.fit_t_env.ou html make_gen.BipartiteEvol html mantel_test html mantel_test_nbpartners html modelSelection-methods html modelSelection html mycorrhizal_network html ostracoda html paleodiv html phyl.pca_pl html phylosignal_network html phylosignal_sub_network html pi_estimator html plot.fit_t.env html plot.fit_t_env.ou html plot_BICompare html plot_ClaDS0_chains html plot_ClaDS_chains html plot_ClaDS_phylo html plot_div.BipartiteEvol html plot_dtt html plot_fit_bd html plot_fit_env html plot_net.BipartiteEvol html plot_phylo_comb html plot_phylosignal_sub_network html plot_prob_dtt html plot_spectR html prob_dtt html radiolaria html redalgae html remove.model html sealevel html shift.estimates html shifts_cetacea html silica html sim.BipartiteEvol html sim.convergence.geo html sim.divergence.geo html sim_ClaDS html sim_MCBD html sim_env_bd html sim_sgd html sim_t_comp html sim_t_env html sim_t_env_ou html sim_t_tworegime html simul.comb.shift html simulateTipData-methods html simulateTipData html spectR html spectR_t html taxo_cetacea html theta_estimator html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RPANDA)