* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RJafroc’ ...
** package ‘RJafroc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpSZU7LX/R.INSTALL39bc0e3e60d3ab/RJafroc/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BMFuncs.cpp -o BMFuncs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CBMFuncs.cpp -o CBMFuncs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MyFOM.cpp -o MyFOM.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RsmFuncs.cpp -o RsmFuncs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SmAucInt.cpp -o SmAucInt.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Transforms.cpp -o Transforms.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RJafroc.so BMFuncs.o CBMFuncs.o MyFOM.o RcppExports.o RsmFuncs.o SmAucInt.o Transforms.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpSZU7LX/R.INSTALL39bc0e3e60d3ab/RJafroc/src'
make[1]: Entering directory '/tmp/RtmpSZU7LX/R.INSTALL39bc0e3e60d3ab/RJafroc/src'
make[1]: Leaving directory '/tmp/RtmpSZU7LX/R.INSTALL39bc0e3e60d3ab/RJafroc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RJafroc/00new/RJafroc/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘RJafroc’
finding HTML links ... done
ChisqrGoodnessOfFit html
Df2RJafrocDataset html
DfBinDataset html
DfCreateCorCbmDataset html
DfExtractCorCbmDataset html
DfExtractDataset html
DfFroc2Lroc html
DfFroc2Roc html
DfLroc2Froc html
DfLroc2Roc html
DfReadCrossedModalities html
DfReadDataFile html
DfSaveDataFile html
DfWriteExcelDataFile html
FitBinormalRoc html
FitCbmRoc html
FitCorCbm html
FitRsmRoc html
PlotBinormalFit html
PlotCbmFit html
PlotEmpiricalOperatingCharacteristics html
PlotRsmOperatingCharacteristics html
RJafroc-package html
RSM_LLF html
RSM_NLF html
RSM_pdfD html
RSM_pdfN html
RSM_wLLF html
RSM_xROC html
RSM_yROC html
SimulateCorCbmDataset html
SimulateFrocDataset html
SimulateFrocFromLrocDataset html
SimulateLrocDataset html
SimulateRocDataset html
SsFrocNhRsmModel html
SsPowerGivenJK html
SsPowerGivenJKDbmVarCom html
SsPowerGivenJKOrVarCom html
SsPowerTable html
SsSampleSizeKGivenJ html
StSignificanceTesting html
StSignificanceTestingCadVsRad html
StSignificanceTestingCrossedModalities
html
UtilAnalyticalAucsRSM html
UtilAucBinormal html
UtilAucCBM html
UtilAucPROPROC html
UtilDBM2ORVarCom html
UtilFigureOfMerit html
UtilIntrinsic2RSM html
UtilLesionDistrVector html
UtilLesionWeightsMatrix html
UtilMeanSquares html
UtilOR2DBMVarCom html
UtilORVarComponentsFactorial html
UtilOutputReport html
UtilPseudoValues html
UtilRSM2Intrinsic html
UtilVarComponentsDBM html
dataset01 html
dataset02 html
dataset03 html
dataset04 html
dataset05 html
dataset06 html
dataset07 html
dataset08 html
dataset09 html
dataset10 html
dataset11 html
dataset12 html
dataset13 html
dataset14 html
datasetBinned123 html
datasetBinned124 html
datasetBinned125 html
datasetCadLroc html
datasetCadSimuFroc html
datasetCrossedModality html
datasetDegenerate html
datasetFROCSpC html
datasetROI html
isBinnedDataset html
isValidDataset html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RJafroc)