* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘REddyProc’ ... ** package ‘REddyProc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RHLightResponseCostC.cpp -o RHLightResponseCostC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c whichValueGreaterEqualC.cpp -o whichValueGreaterEqualC.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o REddyProc.so RHLightResponseCostC.o RcppExports.o whichValueGreaterEqualC.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-REddyProc/00new/REddyProc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘REddyProc’ finding HTML links ... done BerkeleyJulianDateToPOSIXct html DEGebExample html Example_DETha98 html LightResponseCurveFitter-class html LightResponseCurveFitter html LightResponseCurveFitter_computeCost html LightResponseCurveFitter_computeLRCGradient html LightResponseCurveFitter_fitLRC html LightResponseCurveFitter_getOptimizedParameterPositions html LightResponseCurveFitter_getParameterInitials html LightResponseCurveFitter_getParameterNames html LightResponseCurveFitter_getPriorLocation html LightResponseCurveFitter_getPriorScale html LightResponseCurveFitter_isParameterInBounds html LightResponseCurveFitter_optimLRC html LightResponseCurveFitter_optimLRCBounds html LightResponseCurveFitter_optimLRCOnAdjustedPrior html LightResponseCurveFitter_predictGPP html LightResponseCurveFitter_predictLRC html LogisticSigmoidLRCFitter-class html LogisticSigmoidLRCFitter html LogisticSigmoidLRCFitter_predictGPP html NonrectangularLRCFitter-class html NonrectangularLRCFitter html NonrectangularLRCFitter_getParameterNames html NonrectangularLRCFitter_predictGPP html POSIXctToBerkeleyJulianDate html REddyProc-package html REddyProc_defaultunits html RHLightResponseCostC html RectangularLRCFitter-class html RectangularLRCFitter html RectangularLRCFitterCVersion-class html RectangularLRCFitterCVersion html RectangularLRCFitter_predictGPP html estimate_vpd_from_dew html extract_FN15 html fCalcAVPfromVMFandPress html fCalcETfromLE html fCalcExtRadiation html fCalcPotRadiation html fCalcRHfromAVPandTair html fCalcSVPfromTair html fCalcVPDfromRHandTair html fCheckHHTimeSeries html fConvertCtoK html fConvertGlobalToVisible html fConvertKtoC html fConvertTimeToPosix html fConvertVisibleWm2toPhotons html fKeepColumnAttributes html fLloydTaylor html fLoadAmeriflux22 html finding level-2 HTML links ... done fLoadEuroFlux16 html fLoadFluxnet15 html fLoadTXTIntoDataframe html fSplitDateTime html fWriteDataframeToFile html fWriteFrench23 html filterLongRuns html filterLongRunsInVector html filter_entire_days html filter_years_eop html getAmerifluxToBGC05VariableNameMapping html getBGC05ToAmerifluxVariableNameMapping html getExamplePath html getFilledExampleDETha98Data html getREddyProcExampleDir html getTZone html get_day_boundaries html get_timestep_hours html globalDummyVars html help_DateTimes html help_export html partGLControl html partGLControlLasslopCompatible html partGLExtractStandardData html partitionNEEGL html pipe html read_from_ameriflux22 html read_from_fluxnet15 html renameVariablesInDataframe html sEddyProc-class html sEddyProc html sEddyProc_initialize html sEddyProc_sApplyUStarScen html sEddyProc_sCalcPotRadiation html sEddyProc_sEstUstarThold html sEddyProc_sEstUstarThreshold html sEddyProc_sEstUstarThresholdDistribution html sEddyProc_sEstimateUstarScenarios html sEddyProc_sExportData html sEddyProc_sExportResults html sEddyProc_sFillInit html sEddyProc_sFillLUT html sEddyProc_sFillMDC html sEddyProc_sFillVPDFromDew html sEddyProc_sGLFluxPartition html sEddyProc_sGLFluxPartitionUStarScens html sEddyProc_sGetData html sEddyProc_sGetEstimatedUstarThresholdDistribution html sEddyProc_sGetUstarScenarios html sEddyProc_sGetUstarSuffixes html sEddyProc_sMDSGapFill html sEddyProc_sMDSGapFillAfterUStarDistr html sEddyProc_sMDSGapFillAfterUstar html sEddyProc_sMDSGapFillUStarScens html sEddyProc_sMRFluxPartition html sEddyProc_sMRFluxPartitionUStarScens html sEddyProc_sPlotDailySums html sEddyProc_sPlotDailySumsY html sEddyProc_sPlotDiurnalCycle html sEddyProc_sPlotDiurnalCycleM html sEddyProc_sPlotFingerprint html sEddyProc_sPlotFingerprintY html sEddyProc_sPlotHHFluxes html sEddyProc_sPlotHHFluxesY html sEddyProc_sPlotNEEVersusUStarForSeason html sEddyProc_sSetLocationInfo html sEddyProc_sSetUStarSeasons html sEddyProc_sSetUstarScenarios html sEddyProc_sTKFluxPartition html sEddyProc_sTKFluxPartitionUStarScens html sEddyProc_update_ustarthreshold_columns html sEddyProc_useAnnualUStarThresholds html sEddyProc_useSeaonsalUStarThresholds html usControlUstarEst html usControlUstarSubsetting html usCreateSeasonFactorMonth html usCreateSeasonFactorMonthWithinYear html usCreateSeasonFactorYday html usCreateSeasonFactorYdayYear html usEstUstarThreshold html usEstUstarThresholdSingleFw1Binned html usEstUstarThresholdSingleFw2Binned html usGetAnnualSeasonUStarMap html usGetSeasonalSeasonUStarMap html usGetYearOfSeason html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (REddyProc)