* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘REddyProc’ ...
** package ‘REddyProc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp5nV7TO/R.INSTALL1452bd229f2176/REddyProc/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RHLightResponseCostC.cpp -o RHLightResponseCostC.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c whichValueGreaterEqualC.cpp -o whichValueGreaterEqualC.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o REddyProc.so RHLightResponseCostC.o RcppExports.o whichValueGreaterEqualC.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp5nV7TO/R.INSTALL1452bd229f2176/REddyProc/src'
make[1]: Entering directory '/tmp/Rtmp5nV7TO/R.INSTALL1452bd229f2176/REddyProc/src'
make[1]: Leaving directory '/tmp/Rtmp5nV7TO/R.INSTALL1452bd229f2176/REddyProc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-REddyProc/00new/REddyProc/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘REddyProc’
finding HTML links ... done
BerkeleyJulianDateToPOSIXct html
DEGebExample html
Example_DETha98 html
LightResponseCurveFitter-class html
LightResponseCurveFitter html
LightResponseCurveFitter_computeCost html
LightResponseCurveFitter_computeLRCGradient
html
LightResponseCurveFitter_fitLRC html
LightResponseCurveFitter_getOptimizedParameterPositions
html
LightResponseCurveFitter_getParameterInitials
html
LightResponseCurveFitter_getParameterNames
html
LightResponseCurveFitter_getPriorLocation
html
LightResponseCurveFitter_getPriorScale
html
LightResponseCurveFitter_isParameterInBounds
html
LightResponseCurveFitter_optimLRC html
LightResponseCurveFitter_optimLRCBounds
html
LightResponseCurveFitter_optimLRCOnAdjustedPrior
html
LightResponseCurveFitter_predictGPP html
LightResponseCurveFitter_predictLRC html
LogisticSigmoidLRCFitter-class html
LogisticSigmoidLRCFitter html
LogisticSigmoidLRCFitter_predictGPP html
NonrectangularLRCFitter-class html
NonrectangularLRCFitter html
NonrectangularLRCFitter_getParameterNames
html
NonrectangularLRCFitter_predictGPP html
POSIXctToBerkeleyJulianDate html
REddyProc-package html
REddyProc_defaultunits html
RHLightResponseCostC html
RectangularLRCFitter-class html
RectangularLRCFitter html
RectangularLRCFitterCVersion-class html
RectangularLRCFitterCVersion html
RectangularLRCFitter_predictGPP html
estimate_vpd_from_dew html
extract_FN15 html
fCalcAVPfromVMFandPress html
fCalcETfromLE html
fCalcExtRadiation html
fCalcPotRadiation html
fCalcRHfromAVPandTair html
fCalcSVPfromTair html
fCalcVPDfromRHandTair html
fCheckHHTimeSeries html
fConvertCtoK html
fConvertGlobalToVisible html
fConvertKtoC html
fConvertTimeToPosix html
fConvertVisibleWm2toPhotons html
fKeepColumnAttributes html
fLloydTaylor html
fLoadAmeriflux22 html
finding level-2 HTML links ... done
fLoadEuroFlux16 html
fLoadFluxnet15 html
fLoadTXTIntoDataframe html
fSplitDateTime html
fWriteDataframeToFile html
fWriteFrench23 html
filterLongRuns html
filterLongRunsInVector html
filter_entire_days html
filter_years_eop html
getAmerifluxToBGC05VariableNameMapping
html
getBGC05ToAmerifluxVariableNameMapping
html
getExamplePath html
getFilledExampleDETha98Data html
getREddyProcExampleDir html
getTZone html
get_day_boundaries html
get_timestep_hours html
globalDummyVars html
help_DateTimes html
help_export html
partGLControl html
partGLControlLasslopCompatible html
partGLExtractStandardData html
partitionNEEGL html
pipe html
read_from_ameriflux22 html
read_from_fluxnet15 html
renameVariablesInDataframe html
sEddyProc-class html
sEddyProc html
sEddyProc_initialize html
sEddyProc_sApplyUStarScen html
sEddyProc_sCalcPotRadiation html
sEddyProc_sEstUstarThold html
sEddyProc_sEstUstarThreshold html
sEddyProc_sEstUstarThresholdDistribution
html
sEddyProc_sEstimateUstarScenarios html
sEddyProc_sExportData html
sEddyProc_sExportResults html
sEddyProc_sFillInit html
sEddyProc_sFillLUT html
sEddyProc_sFillMDC html
sEddyProc_sFillVPDFromDew html
sEddyProc_sGLFluxPartition html
sEddyProc_sGLFluxPartitionUStarScens html
sEddyProc_sGetData html
sEddyProc_sGetEstimatedUstarThresholdDistribution
html
sEddyProc_sGetUstarScenarios html
sEddyProc_sGetUstarSuffixes html
sEddyProc_sMDSGapFill html
sEddyProc_sMDSGapFillAfterUStarDistr html
sEddyProc_sMDSGapFillAfterUstar html
sEddyProc_sMDSGapFillUStarScens html
sEddyProc_sMRFluxPartition html
sEddyProc_sMRFluxPartitionUStarScens html
sEddyProc_sPlotDailySums html
sEddyProc_sPlotDailySumsY html
sEddyProc_sPlotDiurnalCycle html
sEddyProc_sPlotDiurnalCycleM html
sEddyProc_sPlotFingerprint html
sEddyProc_sPlotFingerprintY html
sEddyProc_sPlotHHFluxes html
sEddyProc_sPlotHHFluxesY html
sEddyProc_sPlotNEEVersusUStarForSeason
html
sEddyProc_sSetLocationInfo html
sEddyProc_sSetUStarSeasons html
sEddyProc_sSetUstarScenarios html
sEddyProc_sTKFluxPartition html
sEddyProc_sTKFluxPartitionUStarScens html
sEddyProc_update_ustarthreshold_columns
html
sEddyProc_useAnnualUStarThresholds html
sEddyProc_useSeaonsalUStarThresholds html
usControlUstarEst html
usControlUstarSubsetting html
usCreateSeasonFactorMonth html
usCreateSeasonFactorMonthWithinYear html
usCreateSeasonFactorYday html
usCreateSeasonFactorYdayYear html
usEstUstarThreshold html
usEstUstarThresholdSingleFw1Binned html
usEstUstarThresholdSingleFw2Binned html
usGetAnnualSeasonUStarMap html
usGetSeasonalSeasonUStarMap html
usGetYearOfSeason html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (REddyProc)