* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘REddyProc’ ...
** package ‘REddyProc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RHLightResponseCostC.cpp -o RHLightResponseCostC.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c whichValueGreaterEqualC.cpp -o whichValueGreaterEqualC.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o REddyProc.so RHLightResponseCostC.o RcppExports.o whichValueGreaterEqualC.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfDZvrf/R.INSTALL17f3e74d305586/REddyProc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-REddyProc/00new/REddyProc/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘REddyProc’
    finding HTML links ... done
    BerkeleyJulianDateToPOSIXct             html  
    DEGebExample                            html  
    Example_DETha98                         html  
    LightResponseCurveFitter-class          html  
    LightResponseCurveFitter                html  
    LightResponseCurveFitter_computeCost    html  
    LightResponseCurveFitter_computeLRCGradient
                                            html  
    LightResponseCurveFitter_fitLRC         html  
    LightResponseCurveFitter_getOptimizedParameterPositions
                                            html  
    LightResponseCurveFitter_getParameterInitials
                                            html  
    LightResponseCurveFitter_getParameterNames
                                            html  
    LightResponseCurveFitter_getPriorLocation
                                            html  
    LightResponseCurveFitter_getPriorScale
                                            html  
    LightResponseCurveFitter_isParameterInBounds
                                            html  
    LightResponseCurveFitter_optimLRC       html  
    LightResponseCurveFitter_optimLRCBounds
                                            html  
    LightResponseCurveFitter_optimLRCOnAdjustedPrior
                                            html  
    LightResponseCurveFitter_predictGPP     html  
    LightResponseCurveFitter_predictLRC     html  
    LogisticSigmoidLRCFitter-class          html  
    LogisticSigmoidLRCFitter                html  
    LogisticSigmoidLRCFitter_predictGPP     html  
    NonrectangularLRCFitter-class           html  
    NonrectangularLRCFitter                 html  
    NonrectangularLRCFitter_getParameterNames
                                            html  
    NonrectangularLRCFitter_predictGPP      html  
    POSIXctToBerkeleyJulianDate             html  
    REddyProc-package                       html  
    REddyProc_defaultunits                  html  
    RHLightResponseCostC                    html  
    RectangularLRCFitter-class              html  
    RectangularLRCFitter                    html  
    RectangularLRCFitterCVersion-class      html  
    RectangularLRCFitterCVersion            html  
    RectangularLRCFitter_predictGPP         html  
    estimate_vpd_from_dew                   html  
    extract_FN15                            html  
    fCalcAVPfromVMFandPress                 html  
    fCalcETfromLE                           html  
    fCalcExtRadiation                       html  
    fCalcPotRadiation                       html  
    fCalcRHfromAVPandTair                   html  
    fCalcSVPfromTair                        html  
    fCalcVPDfromRHandTair                   html  
    fCheckHHTimeSeries                      html  
    fConvertCtoK                            html  
    fConvertGlobalToVisible                 html  
    fConvertKtoC                            html  
    fConvertTimeToPosix                     html  
    fConvertVisibleWm2toPhotons             html  
    fKeepColumnAttributes                   html  
    fLloydTaylor                            html  
    fLoadAmeriflux22                        html  
    finding level-2 HTML links ... done

    fLoadEuroFlux16                         html  
    fLoadFluxnet15                          html  
    fLoadTXTIntoDataframe                   html  
    fSplitDateTime                          html  
    fWriteDataframeToFile                   html  
    fWriteFrench23                          html  
    filterLongRuns                          html  
    filterLongRunsInVector                  html  
    filter_entire_days                      html  
    filter_years_eop                        html  
    getAmerifluxToBGC05VariableNameMapping
                                            html  
    getBGC05ToAmerifluxVariableNameMapping
                                            html  
    getExamplePath                          html  
    getFilledExampleDETha98Data             html  
    getREddyProcExampleDir                  html  
    getTZone                                html  
    get_day_boundaries                      html  
    get_timestep_hours                      html  
    globalDummyVars                         html  
    help_DateTimes                          html  
    help_export                             html  
    partGLControl                           html  
    partGLControlLasslopCompatible          html  
    partGLExtractStandardData               html  
    partitionNEEGL                          html  
    pipe                                    html  
    read_from_ameriflux22                   html  
    read_from_fluxnet15                     html  
    renameVariablesInDataframe              html  
    sEddyProc-class                         html  
    sEddyProc                               html  
    sEddyProc_initialize                    html  
    sEddyProc_sApplyUStarScen               html  
    sEddyProc_sCalcPotRadiation             html  
    sEddyProc_sEstUstarThold                html  
    sEddyProc_sEstUstarThreshold            html  
    sEddyProc_sEstUstarThresholdDistribution
                                            html  
    sEddyProc_sEstimateUstarScenarios       html  
    sEddyProc_sExportData                   html  
    sEddyProc_sExportResults                html  
    sEddyProc_sFillInit                     html  
    sEddyProc_sFillLUT                      html  
    sEddyProc_sFillMDC                      html  
    sEddyProc_sFillVPDFromDew               html  
    sEddyProc_sGLFluxPartition              html  
    sEddyProc_sGLFluxPartitionUStarScens    html  
    sEddyProc_sGetData                      html  
    sEddyProc_sGetEstimatedUstarThresholdDistribution
                                            html  
    sEddyProc_sGetUstarScenarios            html  
    sEddyProc_sGetUstarSuffixes             html  
    sEddyProc_sMDSGapFill                   html  
    sEddyProc_sMDSGapFillAfterUStarDistr    html  
    sEddyProc_sMDSGapFillAfterUstar         html  
    sEddyProc_sMDSGapFillUStarScens         html  
    sEddyProc_sMRFluxPartition              html  
    sEddyProc_sMRFluxPartitionUStarScens    html  
    sEddyProc_sPlotDailySums                html  
    sEddyProc_sPlotDailySumsY               html  
    sEddyProc_sPlotDiurnalCycle             html  
    sEddyProc_sPlotDiurnalCycleM            html  
    sEddyProc_sPlotFingerprint              html  
    sEddyProc_sPlotFingerprintY             html  
    sEddyProc_sPlotHHFluxes                 html  
    sEddyProc_sPlotHHFluxesY                html  
    sEddyProc_sPlotNEEVersusUStarForSeason
                                            html  
    sEddyProc_sSetLocationInfo              html  
    sEddyProc_sSetUStarSeasons              html  
    sEddyProc_sSetUstarScenarios            html  
    sEddyProc_sTKFluxPartition              html  
    sEddyProc_sTKFluxPartitionUStarScens    html  
    sEddyProc_update_ustarthreshold_columns
                                            html  
    sEddyProc_useAnnualUStarThresholds      html  
    sEddyProc_useSeaonsalUStarThresholds    html  
    usControlUstarEst                       html  
    usControlUstarSubsetting                html  
    usCreateSeasonFactorMonth               html  
    usCreateSeasonFactorMonthWithinYear     html  
    usCreateSeasonFactorYday                html  
    usCreateSeasonFactorYdayYear            html  
    usEstUstarThreshold                     html  
    usEstUstarThresholdSingleFw1Binned      html  
    usEstUstarThresholdSingleFw2Binned      html  
    usGetAnnualSeasonUStarMap               html  
    usGetSeasonalSeasonUStarMap             html  
    usGetYearOfSeason                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (REddyProc)