* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RCircos’ ...
** this is package ‘RCircos’ version ‘1.2.2’
** package ‘RCircos’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘RCircos’
    finding HTML links ... done
    RCircos-package                         html  
    RCircos.Adjust.Scatter.Values           html  
    RCircos.Area.Highlight                  html  
    RCircos.Area.Plot                       html  
    RCircos.Chromosome.Ideogram.Plot        html  
    RCircos.Clear.Track                     html  
    RCircos.Clear.Zoom.Area                 html  
    RCircos.Customized.Connection.Plot      html  
    RCircos.Customized.Shape.Plot           html  
    RCircos.Data.Point                      html  
    RCircos.Env                             html  
    RCircos.Gene.Connector.Plot             html  
    RCircos.Gene.Label.Data                 html  
    RCircos.Gene.Name.Plot                  html  
    RCircos.Get.Arrow.Shape                 html  
    RCircos.Get.Chromosome.Order            html  
    RCircos.Get.Core.Components             html  
    RCircos.Get.Data.Point.Height           html  
    RCircos.Get.Default.Parameters          html  
    RCircos.Get.Gene.Label.Locations        html  
    RCircos.Get.Gene.Name.Plot.Parameters   html  
    RCircos.Get.Heatmap.Color.Scale.Location
                                            html  
    RCircos.Get.Heatmap.Color.Scale         html  
    RCircos.Get.Heatmap.Data.Colors         html  
    RCircos.Get.Link.Colors                 html  
    RCircos.Get.Paired.Points.Positions     html  
    RCircos.Get.Plot.Boundary               html  
    RCircos.Get.Plot.Colors                 html  
    RCircos.Get.Plot.Layers                 html  
    RCircos.Get.Polygon.Height              html  
    RCircos.Get.Single.Point.Positions      html  
    RCircos.Get.Start.End.Locations         html  
    RCircos.Get.Track.Positions             html  
    RCircos.Get.Zoom.Data                   html  
    RCircos.Get.Zoom.Range                  html  
    RCircos.Heatmap.Data                    html  
    RCircos.Heatmap.Plot                    html  
    RCircos.Histogram.Data                  html  
    RCircos.Histogram.Plot                  html  
    RCircos.Initialize.Plot.Parameters      html  
    RCircos.Line.Data                       html  
    RCircos.Line.Plot                       html  
    RCircos.Link.Data                       html  
    RCircos.Link.Line                       html  
    RCircos.Link.Plot                       html  
    RCircos.List.Plot.Parameters            html  
    RCircos.Mouse.Expr.Data                 html  
    RCircos.Multiple.Species.Core.Components
                                            html  
    RCircos.Multiple.Species.Dataset        html  
    RCircos.Parallel.Line.Plot              html  
    RCircos.Plot.Heatmap.Color.Scale        html  
    RCircos.Point.Plot                      html  
    RCircos.Polygon.Data                    html  
    RCircos.Polygon.Plot                    html  
    RCircos.Pseudo.Ideogram.From.Labels     html  
    RCircos.Pseudo.Ideogram.From.Table      html  
    RCircos.Rat.Expr.Data                   html  
    RCircos.Reset.Core.Components           html  
    RCircos.Ribbon.Data                     html  
    RCircos.Ribbon.Plot                     html  
    RCircos.Scatter.Data                    html  
    RCircos.Scatter.Plot                    html  
    RCircos.Set.Base.Plot.Positions         html  
    RCircos.Set.Core.Components             html  
    RCircos.Set.Cytoband.Data               html  
    RCircos.Set.Plot.Area                   html  
    RCircos.Set.Zoom.Plot.Positions         html  
    RCircos.Sort.Genomic.Data               html  
    RCircos.Tile.Data                       html  
    RCircos.Tile.Plot                       html  
    RCircos.Track.Outline                   html  
    RCircos.Validate.Cyto.Info              html  
    RCircos.Validate.Genomic.Data           html  
    RCircos.Validate.Genomic.Info           html  
    RCircos.Validate.Plot.Parameters        html  
    RCircos.Validate.Track.Positions        html  
    RCircos.Vertical.Line.Plot              html  
    RCircos.Workflow                        html  
    RCircos.Zoom.Area.Outline               html  
    RCircos.Zoom.Paired.Plot.Positions      html  
    RCircos.Zoom.Single.Plot.Positions      html  
    RCircos.ZoomIn.Chromosome               html  
    RCircos.ZoomIn.Plot                     html  
    RCircos.ZoomOut.Chromosome              html  
    RCircos.defaultBasePerUnits             html  
    RCircos.defaultCharWidth                html  
    RCircos.defaultChromPadding             html  
    RCircos.defaultCircosUnits              html  
    RCircos.defaultTextSize                 html  
    RCircos.heatmapColors                   html  
    RCircos.paddingConst                    html  
    RCircos.plotTypes                       html  
    UCSC.Baylor.3.4.Rat.cytoBandIdeogram    html  
    UCSC.HG19.Human.CytoBandIdeogram        html  
    UCSC.HG38.Human.CytoBandIdeogram        html  
    UCSC.Mouse.GRCm38.CytoBandIdeogram      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RCircos)