* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘RAS’ ...
** this is package ‘RAS’ version ‘1.1.3’
** package ‘RAS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDwT5H2/R.INSTALL19550948be21d3/RAS/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c detect_c.c -o detect_c.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geno_io.c -o geno_io.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c gwas_c.c -o gwas_c.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c malloc_trim.c -o malloc_trim.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c plink_io.c -o plink_io.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c scan_c.c -o scan_c.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o RAS.so detect_c.o geno_io.o gwas_c.o init.o malloc_trim.o plink_io.o scan_c.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDwT5H2/R.INSTALL19550948be21d3/RAS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDwT5H2/R.INSTALL19550948be21d3/RAS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDwT5H2/R.INSTALL19550948be21d3/RAS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-RAS/00new/RAS/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘RAS’
    finding HTML links ... done
    RAS-package                             html  
    bed_to_rasbin                           html  
    compute_gwas_weights                    html  
    compute_gwas_weights_original           html  
    compute_pgs_matrix                      html  
    geno_to_rasbin                          html  
    get_break_points                        html  
    get_local_maximum                       html  
    plot.ras                                html  
    plot_ras_scan                           html  
    plot_ras_zoom_regions                   html  
    print.ras                               html  
    ras-aliases                             html  
    ras                                     html  
    ras_box_calibrate                       html  
    ras_box_detect                          html  
    ras_box_stat                            html  
    ras_detect                              html  
    ras_detect_original                     html  
    ras_harmonize_sumstats                  html  
    ras_liftover_sumstats                   html  
    ras_map_ids_to_rsid                     html  
    ras_memory                              html  
    ras_original                            html  
    ras_read_variant_dictionary             html  
    ras_scan                                html  
    ras_scan_external                       html  
    ras_scan_external_original              html  
    ras_scan_original                       html  
    ras_sumstats_report                     html  
    ras_validate                            html  
    ras_weights_from_sumstats               html  
    rasbin_header                           html  
    rasbin_read_chunk                       html  
    release_memory                          html  
    screen_forward_max_region               html  
    screen_forward_max_region_original      html  
    slope_test                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RAS)