* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘Qploidy’ ... ** this is package ‘Qploidy’ version ‘1.0.1’ ** package ‘Qploidy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Qploidy’ finding HTML links ... done all_resolutions_plots html area_estimate_ploidy html clean_summary html find_header_line html get_R_theta html get_aneuploids html get_baf html get_baf_par html get_centers html get_zscore html merge_arms_format html mode html pascalTriangle html plot_baf html plot_baf_hist html plot_qploidy_standardization html print.qploidy_area_ploidy_estimation html print.qploidy_standardization html qploidy_read_vcf html read_axiom html read_illumina_array html read_qploidy_standardization html rm_outlier html simulate_axiom_summary html simulate_illumina_file html simulate_standardization_input html simulate_vcf html standardize html summary_to_fitpoly html updog_centers html vcf_sanity_check html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Qploidy)