* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Qploidy’ ...
** this is package ‘Qploidy’ version ‘1.0.1’
** package ‘Qploidy’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Qploidy’
    finding HTML links ... done
    all_resolutions_plots                   html  
    area_estimate_ploidy                    html  
    clean_summary                           html  
    find_header_line                        html  
    get_R_theta                             html  
    get_aneuploids                          html  
    get_baf                                 html  
    get_baf_par                             html  
    get_centers                             html  
    get_zscore                              html  
    merge_arms_format                       html  
    mode                                    html  
    pascalTriangle                          html  
    plot_baf                                html  
    plot_baf_hist                           html  
    plot_qploidy_standardization            html  
    print.qploidy_area_ploidy_estimation    html  
    print.qploidy_standardization           html  
    qploidy_read_vcf                        html  
    read_axiom                              html  
    read_illumina_array                     html  
    read_qploidy_standardization            html  
    rm_outlier                              html  
    simulate_axiom_summary                  html  
    simulate_illumina_file                  html  
    simulate_standardization_input          html  
    simulate_vcf                            html  
    standardize                             html  
    summary_to_fitpoly                      html  
    updog_centers                           html  
    vcf_sanity_check                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Qploidy)