* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘QFASA’ ...
** package ‘QFASA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
#/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript --vanilla -e "TMB::compile('ErrorModelSimpleEquant.cpp','-O0 -g', safebounds=FALSE,safeunload=FALSE)"
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript --vanilla -e "TMB::compile('ErrorModelSimpleEquant.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/hornik/.R/Makevars-gcc
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[2]: Entering directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ErrorModelSimpleEquant -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ErrorModelSimpleEquant.cpp -o ErrorModelSimpleEquant.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ErrorModelSimpleEquant.so ErrorModelSimpleEquant.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[2]: Leaving directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
make[2]: Entering directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
make[2]: Leaving directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
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#/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript --vanilla -e "TMB::compile('CommonDiet.cpp','-O0 -g',safebounds=FALSE,safeunload=FALSE)"
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript --vanilla -e "TMB::compile('CommonDiet.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/hornik/.R/Makevars-gcc
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[2]: Entering directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_CommonDiet -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CommonDiet.cpp -o CommonDiet.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CommonDiet.so CommonDiet.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[2]: Leaving directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
make[2]: Entering directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
make[2]: Leaving directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
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# Comment here preserves the prior tab
make[1]: Leaving directory '/tmp/RtmpIMl8ae/R.INSTALL18bbca3cc84bae/QFASA/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-QFASA/00new/QFASA/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘QFASA’
finding HTML links ... done
AIT.dist html
AIT.more html
AIT.obj html
CC html
CS.more html
CS.obj html
FAset html
KL.dist html
KL.more html
KL.obj html
MEANmeth html
POOLVARmeth html
QFASA html
QFASA.const.eqn html
Tstar.beta html
backward.elimination html
bal.diet.data html
bal.rep.CI html
bestBackwardModel html
bestForwardModel html
bestSubset html
beta.meths.CI html
beta.pval.k html
bias.all html
bias.comp html
bisect.beta.lim html
chisq.CA html
chisq.dist html
comp.Tstar.beta html
comp.beta.pval.k html
comp.gen.pseudo.seals html
comp.p.beta html
comp.rep html
conf.meth html
create.d.mat html
cs_distance.mat html
data.sim.beta html
dummy html
evaluateCombination html
evaluateModel html
forward.selection html
gen.pseudo.seals html
likelihoodEstimates html
mean_geometric html
mod.zeros.FA.sig html
mod.zeros.FA.sig.mat html
multiplicativeReplacement html
opt.beta.lim html
p.MLE html
p.MUFASA html
p.QFASA html
p.SMUFASA html
p.beta html
p.sim.QFASA html
predatorFAs html
prey.cluster html
prey.on.prey html
preyFAs html
pseudo.pred html
pseudo.pred.norm html
pseudo.pred.rep html
pseudo.pred.table html
pseudo.seal html
rho.boot.fun html
rho.jack.fun html
root.beta html
split_prey html
testfordiff.ind.boot html
testfordiff.ind.boot.fun html
testfordiff.ind.pval html
two.factor.rep html
unbal.diet.data html
unbal.rep.CI html
unbal.rho.boot.fun html
unbal.rho.jack.fun html
unbal.two.factor.rep html
uniroot.beta html
zeroEstimates html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (QFASA)