• using R version 4.5.1 Patched (2025-08-11 r88569)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘ProjectTemplate/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ProjectTemplate’ version ‘0.11.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ProjectTemplate’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/12s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [40s/89s] ERROR   Running ‘run-all.R’ [20s/48s]   Running ‘testthat.R’ [19s/41s] Running the tests in ‘tests/run-all.R’ failed. Complete output:   > library(testthat)   >   > test_check("ProjectTemplate")   Loading required package: ProjectTemplate   Loading required package: digest   Loading required package: tibble   Project name: test_projectf3bf25fd97137   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf266bf200   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf239266c82   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_projectf3bf239266c82   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_projectf3bf239266c82   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf22a9e359   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_projectf3bf272a5ab17   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_projectf3bf272a5ab17   Clearing cache for project: test_projectf3bf22aaf979a   Objects to clear from memory: xxx   Project name: test_projectf3bf22aaf979a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_projectf3bf258f5c94d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf258f5c94d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_projectf3bf27500674e   Project name: test_projectf3bf24e8ee694   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf2298a620   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Current Directory: test_projectf3bf27ef07a53 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_projectf3bf27ef07a53 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project2f3bf222ec7c61 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config filef3bf22c99dcd5 helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_projectf3bf22bb7c129 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_projectf3bf271640899   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_projectf3bf213965051   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_projectf3bf25f24f7e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf25f24f7e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf22ae27e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf22ae27e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf219020480   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf219020480   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf227c40f69   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf2203e3af1   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf2203e3af1   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf240978fa7   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf240978fa7   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf27f117019   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf27f117019   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf2795ae7f5   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf2795ae7f5   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_projectf3bf22ce52661   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf22ce52661   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_projectf3bf2552c4da   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_projectf3bf277f0b1c3   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf231ee2f0f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf3bf250d9759   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(ProjectTemplate)   Loading required package: digest   Loading required package: tibble   >   > test_check("ProjectTemplate")   Project name: test_projectf89d8bdcef40   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d82f420c2d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d83c822f5f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_projectf89d83c822f5f   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_projectf89d83c822f5f   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d81717664b   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_projectf89d8635a08b1   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_projectf89d8635a08b1   Clearing cache for project: test_projectf89d87b354765   Objects to clear from memory: xxx   Project name: test_projectf89d87b354765   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_projectf89d8cb983e9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d8cb983e9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_projectf89d82bbbdb6b   Project name: test_projectf89d840af1513   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d865f47000   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Current Directory: test_projectf89d831bb1d05 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_projectf89d831bb1d05 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project2f89d836b3e2e6 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config filef89d898ebaff helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_projectf89d866a0ef5b is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_projectf89d81c2a247a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_projectf89d847dc50dd   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_projectf89d83b2c7177   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d83b2c7177   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d84b068629   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d84b068629   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d8654b880f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d8654b880f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d83f5eeeff   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d8e66487e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d8e66487e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d8178e538   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d8178e538   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d82af3ca5f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d82af3ca5f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d848140f1d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d848140f1d   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_projectf89d853340b32   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d853340b32   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_projectf89d81228dc74   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_projectf89d856732f0f   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d86a7fef7   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_projectf89d818c73c70   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR