* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PresenceAbsence’ ...
** this is package ‘PresenceAbsence’ version ‘1.1.11’
** package ‘PresenceAbsence’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PresenceAbsence’
    finding HTML links ... done
    Kappa                                   html  
    PresenceAbsence.package                 html  
    SIM3DATA                                html  
    SPDATA                                  html  
    SPPREV                                  html  
    auc                                     html  
    auc.roc.plot                            html  
    calibration.plot                        html  
    cmx                                     html  
    error.threshold.plot                    html  
    optimal.thresholds                      html  
    pcc                                     html  
    predicted.prevalence                    html  
    presence.absence.accuracy               html  
    presence.absence.hist                   html  
    presence.absence.simulation             html  
    presence.absence.summary                html  
    roc.plot.calculate                      html  
    sensitivity                             html  
    specificity                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PresenceAbsence)