* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PolyHaplotyper’ ...
** this is package ‘PolyHaplotyper’ version ‘1.0.1’
** package ‘PolyHaplotyper’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PolyHaplotyper’
    finding HTML links ... done
    allHaplotypes                           html  
    allhap                                  html  
    build_ahccompletelist                   html  
    calcMrkHaptable                         html  
    calcStatistics                          html  
    checkmrkDosage                          html  
    compareHapMrkDosages                    html  
    compareHapresults                       html  
    demo_ped                                html  
    demo_snpdos                             html  
    expandHapdos                            html  
    getFSfreqs                              html  
    getGameteFreqs                          html  
    hapcomb2hapdos                          html  
    hapdos2hapcomb                          html  
    hapdos2mrkdos                           html  
    haploblock_df2list                      html  
    inferHaplotypes                         html  
    make.Happyinf.input                     html  
    make.SATlotyper.input                   html  
    make.ShesisPlus.input                   html  
    mergeReplicates                         html  
    mrkdid2mrkdos                           html  
    mrkdos2mrkdid                           html  
    overviewByFS                            html  
    padded                                  html  
    pedigreeHapCheck                        html  
    pedigreeSim2PH                          html  
    phFS                                    html  
    phblocks                                html  
    phdos                                   html  
    phpar                                   html  
    phped                                   html  
    phresults                               html  
    read.Happyinf.output                    html  
    read.SATlotyper.output                  html  
    read.ShesisPlus.output                  html  
    run.SATlotyper                          html  
    showOneFS                               html  
    totHapcombCount                         html  
    usedhap                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PolyHaplotyper)