* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PoDBAY’ ...
** package ‘PoDBAY’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpQHnlGR/R.INSTALL338bac42b04956/PoDBAY/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c cppUtilities.cpp -o cppUtilities.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PoDBAY.so RcppExports.o cppUtilities.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQHnlGR/R.INSTALL338bac42b04956/PoDBAY/src'
make[1]: Entering directory '/tmp/RtmpQHnlGR/R.INSTALL338bac42b04956/PoDBAY/src'
make[1]: Leaving directory '/tmp/RtmpQHnlGR/R.INSTALL338bac42b04956/PoDBAY/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PoDBAY/00new/PoDBAY/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PoDBAY’
    finding HTML links ... done
    BlindSampling                           html  
    ClinicalTrial                           html  
    ClinicalTrialCoverage                   html  
    EfficacyCI                              html  
    EfficacyCICoverage                      html  
    ExpectedPoD                             html  
    ExtractDiseased                         html  
    ExtractNondiseased                      html  
    GenerateNondiseased                     html  
    ImmunogenicitySubset                    html  
    JitterMean                              html  
    MLE                                     html  
    PmaxEstimation                          html  
    PoD                                     html  
    PoDBAY                                  html  
    PoDBAYEfficacy                          html  
    PoDCI                                   html  
    PoDCurvePlot                            html  
    PoDEfficacySquaredError                 html  
    PoDMLE                                  html  
    PoDParamEstimation                      html  
    PoDParamPointEstimation                 html  
    PoDParams                               html  
    PoDParamsCI                             html  
    PoDParamsCICoverage                     html  
    Population-class                        html  
    assignPoD                               html  
    control                                 html  
    cppMLE                                  html  
    cppPoD                                  html  
    diseased                                html  
    efficacyComputation                     html  
    efficacySet                             html  
    efficacySquaredError                    html  
    estimatedParameters                     html  
    fitPoD                                  html  
    generatePopulation                      html  
    getDiseasedCount                        html  
    getDiseasedTiters                       html  
    getNondiseasedCount                     html  
    getNondiseasedTiters                    html  
    getTiters                               html  
    getUnknown                              html  
    incorrectInput                          html  
    incorrectPopulationInput                html  
    nondiseased                             html  
    numToBool                               html  
    popFun                                  html  
    popX                                    html  
    vaccinated                              html  
    waldCI                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PoDBAY)