* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Platypus’ ...
** this is package ‘Platypus’ version ‘3.6.0’
** package ‘Platypus’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Platypus’
    finding HTML links ... done
    GEX_DEgenes                             html  
    GEX_GSEA                                html  
    GEX_cluster_genes                       html  
    GEX_cluster_genes_heatmap               html  
    GEX_cluster_membership                  html  
    GEX_coexpression_coefficient            html  
    GEX_dottile_plot                        html  
    GEX_gene_visualization                  html  
    GEX_heatmap                             html  
    GEX_lineage_trajectories                html  
    GEX_pairwise_DEGs                       html  
    GEX_phenotype                           html  
    GEX_phenotype_per_clone                 html  
    GEX_proportions_barplot                 html  
    GEX_scatter_coexpression                html  
    GEX_volcano                             html  
    PlatypusDB_AIRR_to_VGM                  html  
    PlatypusDB_VGM_to_AIRR                  html  
    PlatypusDB_load_from_disk               html  
    VDJ_GEX_clonotype_clusters_circos       html  
    VDJ_GEX_matrix                          html  
    VDJ_GEX_overlay_clones                  html  
    VDJ_GEX_stats                           html  
    VDJ_VJ_usage_circos                     html  
    VDJ_Vgene_usage                         html  
    VDJ_Vgene_usage_barplot                 html  
    VDJ_Vgene_usage_stacked_barplot         html  
    VDJ_abundances                          html  
    VDJ_alpha_beta_Vgene_circos             html  
    VDJ_antigen_integrate                   html  
    VDJ_assemble_for_PnP                    html  
    VDJ_build                               html  
    VDJ_call_enclone                        html  
    VDJ_circos                              html  
    VDJ_clonal_barplot                      html  
    VDJ_clonal_donut                        html  
    VDJ_clonal_expansion                    html  
    VDJ_clonotype                           html  
    VDJ_clonotype_v3_w_enclone              html  
    VDJ_contigs_to_vgm                      html  
    VDJ_db_annotate                         html  
    VDJ_db_load                             html  
    VDJ_diversity                           html  
    VDJ_dynamics                            html  
    VDJ_expand_aberrants                    html  
    VDJ_extract_germline_consensus_ref      html  
    VDJ_germline                            html  
    VDJ_get_public                          html  
    VDJ_kmers                               html  
    VDJ_logoplot_vector                     html  
    VDJ_network                             html  
    VDJ_ordination                          html  
    VDJ_overlap_heatmap                     html  
    VDJ_phylogenetic_trees                  html  
    VDJ_phylogenetic_trees_plot             html  
    VDJ_plot_SHM                            html  
    VDJ_public                              html  
    VDJ_rarefaction                         html  
    VDJ_variants_per_clone                  html  
    VGM_build                               html  
    VGM_expand_featurebarcodes              html  
    VGM_expanded_clones                     html  
    VGM_integrate                           html  
    small_vdj                               html  
    small_vgm                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Platypus)