* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PhotoGEA’ ...
** this is package ‘PhotoGEA’ version ‘1.3.3’
** package ‘PhotoGEA’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘PhotoGEA’
finding HTML links ... done
PhotoGEA html
PhotoGEA_example_file_path html
apply_gm html
as.data.frame.exdf html
barchart_with_errorbars html
basic_stats html
by.exdf html
c3_temperature_param_bernacchi html
c3_temperature_param_flat html
c3_temperature_param_sharkey html
c4_temperature_param_flat html
c4_temperature_param_vc html
calculate_ball_berry_index html
calculate_c3_assimilation html
calculate_c3_limitations_grassi html
calculate_c3_limitations_warren html
calculate_c3_variable_j html
calculate_c4_assimilation html
calculate_c4_assimilation_hyperbola html
calculate_gamma_star html
calculate_gas_properties html
calculate_gm_busch html
calculate_gm_ubierna html
calculate_isotope_discrimination html
calculate_jmax html
calculate_leakiness_ubierna html
calculate_temperature_response html
calculate_temperature_response_arrhenius
html
calculate_temperature_response_gaussian
html
calculate_temperature_response_johnson
html
calculate_temperature_response_polynomial
html
calculate_ternary_correction html
calculate_total_pressure html
calculate_wue html
cbind.exdf html
check_required_variables html
check_response_curve_data html
choose_input_files html
confidence_intervals_c3_aci html
confidence_intervals_c3_variable_j html
confidence_intervals_c4_aci html
confidence_intervals_c4_aci_hyperbola html
consolidate html
csv.exdf html
deprecated html
dim.exdf html
dimnames.exdf html
document_variables html
error_function_c3_aci html
error_function_c3_variable_j html
error_function_c4_aci html
error_function_c4_aci_hyperbola html
estimate_licor_variance html
estimate_operating_point html
example_data_files html
exclude_outliers html
exdf html
extract.exdf html
factorize_id_column html
fit_ball_berry html
fit_c3_aci html
fit_c3_variable_j html
fit_c4_aci html
fit_c4_aci_hyperbola html
fit_laisk html
fit_medlyn html
get_oxygen_from_preamble html
get_sample_valve_from_filename html
identifier_columns html
identify_c3_limiting_processes html
identify_common_columns html
identify_tdl_cycles html
initial_guess_c3_aci html
initial_guess_c3_variable_j html
initial_guess_c4_aci html
initial_guess_c4_aci_hyperbola html
is.exdf html
jmax_temperature_param_bernacchi html
jmax_temperature_param_flat html
length.exdf html
multi_curve_colors html
optimizers html
organize_response_curve_data html
pair_gasex_and_tdl html
pdf_print html
plot_ball_berry_fit html
plot_c3_aci_fit html
plot_c4_aci_fit html
plot_c4_aci_hyperbola_fit html
plot_laisk_fit html
print.exdf html
process_tdl_cycle_erml html
process_tdl_cycle_polynomial html
read_cr3000 html
read_gasex_file html
read_licor_6800_Excel html
read_licor_6800_plaintext html
remove_points html
residual_stats html
set_variable html
smooth_tdl_data html
split.exdf html
str.exdf html
xyplot_avg_rc html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PhotoGEA)