* using log directory ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PhotoGEA.Rcheck’
* using R version 4.5.1 Patched (2025-07-14 r88410)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘PhotoGEA/DESCRIPTION’ ... OK
* this is package ‘PhotoGEA’ version ‘1.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PhotoGEA’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/PhotoGEA-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s/34s] OK
* checking Rd files ... [2s/4s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [136s/180s] OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
confidence_intervals_c3_aci     7.571  0.012   9.902
fit_c3_variable_j               6.916  0.024   8.915
confidence_intervals_c4_aci     6.785  0.016   8.462
fit_c3_aci                      6.094  0.011   9.122
initial_guess_c3_variable_j     5.575  0.012   7.083
calculate_c3_limitations_warren 5.003  0.003   9.347
fit_c4_aci                      4.785  0.004   5.654
calculate_c3_limitations_grassi 4.297  0.015   5.465
plot_c3_aci_fit                 4.231  0.027   5.651
calculate_jmax                  4.198  0.015   5.320
process_tdl_cycle_erml          3.937  0.008   5.363
plot_c4_aci_fit                 3.705  0.008   5.180
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [179s/230s] OK
  Running ‘testthat.R’ [178s/230s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [48s/60s] OK
* checking PDF version of manual ... [16s/20s] OK
* checking HTML version of manual ... [12s/20s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK