* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PhenotypeSimulator’ ...
** this is package ‘PhenotypeSimulator’ version ‘0.3.4’
** package ‘PhenotypeSimulator’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzVLk95/R.INSTALL1cbc4b574fab1e/PhenotypeSimulator/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c read_lines.cpp -o read_lines.o
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PhenotypeSimulator.so RcppExports.o read_lines.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzVLk95/R.INSTALL1cbc4b574fab1e/PhenotypeSimulator/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzVLk95/R.INSTALL1cbc4b574fab1e/PhenotypeSimulator/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzVLk95/R.INSTALL1cbc4b574fab1e/PhenotypeSimulator/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PhenotypeSimulator/00new/PhenotypeSimulator/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PhenotypeSimulator’
    finding HTML links ... done
    PhenotypeSimulator                      html  
    addNonNulls                             html  
    commaList2vector                        html  
    correlatedBgEffects                     html  
    expGen2probGen                          html  
    geneticBgEffects                        html  
    geneticFixedEffects                     html  
    getAlleleFrequencies                    html  
    getCausalSNPs                           html  
    getKinship                              html  
    noiseBgEffects                          html  
    noiseFixedEffects                       html  
    probGen2expGen                          html  
    readStandardGenotypes                   html  
    read_lines                              html  
    rescaleVariance                         html  
    runSimulation                           html  
    savePheno                               html  
    setModel                                html  
    simulateDist                            html  
    simulateGenotypes                       html  
    simulatePhenotypes                      html  
    standardiseGenotypes                    html  
    testNumerics                            html  
    transformNonlinear                      html  
    vmessage                                html  
    writeStandardOutput                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PhenotypeSimulator)