* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Phase12Compare’ ...
** package ‘Phase12Compare’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp94OcxA/R.INSTALL2aa4f33c52f01b/Phase12Compare/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SPSOCODE.cpp -o SPSOCODE.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from SPSOCODE.cpp:3:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: ‘#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed’
321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: ‘#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead’
326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: ‘#pragma message: INFO: see the documentation for details’
329 | #pragma message ("INFO: see the documentation for details")
| ^
SPSOCODE.cpp: In function ‘arma::mat MATMULT(arma::mat, arma::mat)’:
SPSOCODE.cpp:54:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
54 | for(j = 0 ;j<X.n_rows;j++){
| ~^~~~~~~~~
SPSOCODE.cpp:55:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
55 | for(k=0;k<PROD.n_cols;k++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:57:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
57 | for(m=0;m<X.n_cols;m++){
| ~^~~~~~~~~
SPSOCODE.cpp: In function ‘arma::vec GETBIN(arma::vec)’:
SPSOCODE.cpp:98:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
98 | for(j=1;j<PVEC.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp: In function ‘int ReturnOpt(arma::vec, arma::vec)’:
SPSOCODE.cpp:243:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
243 | for(j=0;j<DoseTried1.n_rows;j++){
| ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘double GetMin(arma::vec)’:
SPSOCODE.cpp:387:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
387 | for(j=1;j<DESIRE.n_rows;j++){
| ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘int GetOrderSum(arma::vec)’:
SPSOCODE.cpp:547:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
547 | for(k=1;k<Y.n_rows;k++){
| ~^~~~~~~~~
SPSOCODE.cpp: In function ‘arma::vec GlobalPropose(arma::vec, int)’:
SPSOCODE.cpp:601:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
601 | for(k=1;k<(MUPROP.n_rows-1);k++){
| ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:614:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
614 | for(k=1;k<(MUPROP.n_rows-1);k++){
| ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:628:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
628 | for(k=0;k<MUPROP.n_rows;k++){
| ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘double Like(arma::vec, arma::vec, arma::vec, arma::vec, double, int)’:
SPSOCODE.cpp:700:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
700 | for(i=0;i<YE.n_rows;i++){
| ~^~~~~~~~~~
SPSOCODE.cpp:676:7: warning: unused variable ‘m’ [-Wunused-variable]
676 | int m=0;
| ^
SPSOCODE.cpp: In function ‘int GetDose1(arma::vec)’:
SPSOCODE.cpp:775:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
775 | for(j=0;j<DESIRE.n_rows;j++){
| ~^~~~~~~~~~~~~~
SPSOCODE.cpp:836:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
836 | if(which1==(cumprob.n_rows-1)){
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘int GetDose2(arma::vec, arma::vec)’:
SPSOCODE.cpp:890:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
890 | for(j=0;j<DoseTried1.n_rows;j++){
| ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:901:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
901 | for(j=0;j<Desire.n_rows;j++){
| ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘int GetDose3(arma::vec, arma::vec)’:
SPSOCODE.cpp:942:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
942 | for(j=0;j<DoseTried1.n_rows;j++){
| ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:953:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
953 | for(j=0;j<Desire.n_rows;j++){
| ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘int RandomDoseUT(arma::vec, arma::vec)’:
SPSOCODE.cpp:989:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
989 | for(j=0;j<DoseTried1.n_rows;j++){
| ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:1000:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1000 | for(j=0;j<Desire.n_rows;j++){
| ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function ‘Rcpp::List RunAdaptiveEffToxTrialCORR(int, arma::vec, arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, int, int, double, int, arma::mat)’:
SPSOCODE.cpp:1365:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1365 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1410:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1410 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1411:26: warning: comparison of integer expressions of different signedness: ‘arma::enable_if2<true, unsigned int>::result’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1411 | if(sum(Doses2==j)>=cohort){
| ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:1434:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1434 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1454:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1454 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1536:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1536 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1702:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1702 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1749:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1749 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1750:26: warning: comparison of integer expressions of different signedness: ‘arma::enable_if2<true, unsigned int>::result’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1750 | if(sum(Doses2==j)>=cohort){
| ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:1773:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1773 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1793:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1793 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1823:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1823 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1858:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1858 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1080:10: warning: unused variable ‘p’ [-Wunused-variable]
1080 | double p=0;
| ^
SPSOCODE.cpp:1081:10: warning: unused variable ‘pu’ [-Wunused-variable]
1081 | double pu=0;
| ^~
SPSOCODE.cpp:1082:10: warning: unused variable ‘pl’ [-Wunused-variable]
1082 | double pl=0;
| ^~
SPSOCODE.cpp:1083:10: warning: unused variable ‘tol’ [-Wunused-variable]
1083 | double tol=.005;
| ^~~
SPSOCODE.cpp:1109:7: warning: unused variable ‘Count’ [-Wunused-variable]
1109 | int Count=0;
| ^~~~~
SPSOCODE.cpp:1119:7: warning: unused variable ‘nREP’ [-Wunused-variable]
1119 | int nREP=0;
| ^~~~
SPSOCODE.cpp:1162:10: warning: unused variable ‘min1’ [-Wunused-variable]
1162 | double min1=0;
| ^~~~
SPSOCODE.cpp: In function ‘Rcpp::List RunAdaptiveEffToxTrialCORRCONTOUR(int, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, int, int, double, int, arma::mat)’:
SPSOCODE.cpp:2244:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2244 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2289:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2289 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2290:26: warning: comparison of integer expressions of different signedness: ‘arma::enable_if2<true, unsigned int>::result’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2290 | if(sum(Doses2==j)>=cohort){
| ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:2309:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2309 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2328:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2328 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2400:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2400 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2566:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2566 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2610:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2610 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2611:26: warning: comparison of integer expressions of different signedness: ‘arma::enable_if2<true, unsigned int>::result’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2611 | if(sum(Doses2==j)>=cohort){
| ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:2631:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2631 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2650:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2650 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2672:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2672 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:2708:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2708 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:1990:7: warning: unused variable ‘Count’ [-Wunused-variable]
1990 | int Count=0;
| ^~~~~
SPSOCODE.cpp:2000:7: warning: unused variable ‘nREP’ [-Wunused-variable]
2000 | int nREP=0;
| ^~~~
SPSOCODE.cpp:2043:10: warning: unused variable ‘min1’ [-Wunused-variable]
2043 | double min1=0;
| ^~~~
SPSOCODE.cpp: In function ‘Rcpp::List UTEFFTOX(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, double)’:
SPSOCODE.cpp:3408:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
3408 | for(k=1;k<ORDER.n_rows;k++){
| ~^~~~~~~~~~~~~
SPSOCODE.cpp:3521:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
3521 | for(k=1;k<ORDER.n_rows;k++){
| ~^~~~~~~~~~~~~
SPSOCODE.cpp:2821:10: warning: unused variable ‘phivar’ [-Wunused-variable]
2821 | double phivar=Hypervars[2]; //Variance parameter for frailty correlations
| ^~~~~~
SPSOCODE.cpp:2822:10: warning: variable ‘phi’ set but not used [-Wunused-but-set-variable]
2822 | double phi=0;
| ^~~
SPSOCODE.cpp:2893:10: warning: unused variable ‘epprop’ [-Wunused-variable]
2893 | double epprop = 0; //proposal values for epsilon
| ^~~~~~
SPSOCODE.cpp:2942:10: warning: unused variable ‘epEC’ [-Wunused-variable]
2942 | double epEC = 1;
| ^~~~
SPSOCODE.cpp:2943:10: warning: unused variable ‘epTC’ [-Wunused-variable]
2943 | double epTC = 1;
| ^~~~
SPSOCODE.cpp:2982:10: warning: unused variable ‘holdmin’ [-Wunused-variable]
2982 | double holdmin=1;
| ^~~~~~~
SPSOCODE.cpp: In function ‘Rcpp::List AssignEffTox(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, double)’:
SPSOCODE.cpp:4002:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4002 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4047:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4047 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4065:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4065 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4084:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4084 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4114:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4114 | for(j=1;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:3744:7: warning: unused variable ‘Stopped’ [-Wunused-variable]
3744 | int Stopped=0;
| ^~~~~~~
SPSOCODE.cpp:3791:7: warning: unused variable ‘Count’ [-Wunused-variable]
3791 | int Count=0;
| ^~~~~
SPSOCODE.cpp:3801:7: warning: unused variable ‘nREP’ [-Wunused-variable]
3801 | int nREP=0;
| ^~~~
SPSOCODE.cpp:3824:7: warning: unused variable ‘m’ [-Wunused-variable]
3824 | int m=0;
| ^
SPSOCODE.cpp:3841:7: warning: variable ‘STOPPED’ set but not used [-Wunused-but-set-variable]
3841 | int STOPPED=0;
| ^~~~~~~
SPSOCODE.cpp:3842:7: warning: unused variable ‘i’ [-Wunused-variable]
3842 | int i=0;
| ^
SPSOCODE.cpp:3844:10: warning: unused variable ‘min1’ [-Wunused-variable]
3844 | double min1=0;
| ^~~~
SPSOCODE.cpp:3848:7: warning: unused variable ‘nRep’ [-Wunused-variable]
3848 | int nRep=0;
| ^~~~
SPSOCODE.cpp: In function ‘Rcpp::List AssignEffToxUT(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, double)’:
SPSOCODE.cpp:4471:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4471 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4516:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4516 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4536:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4536 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4559:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4559 | for(j=0;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4598:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4598 | for(j=1;j<Dose.n_rows;j++){
| ~^~~~~~~~~~~~
SPSOCODE.cpp:4222:7: warning: unused variable ‘Stopped’ [-Wunused-variable]
4222 | int Stopped=0;
| ^~~~~~~
SPSOCODE.cpp:4240:10: warning: unused variable ‘p’ [-Wunused-variable]
4240 | double p=0;
| ^
SPSOCODE.cpp:4241:10: warning: unused variable ‘pu’ [-Wunused-variable]
4241 | double pu=0;
| ^~
SPSOCODE.cpp:4242:10: warning: unused variable ‘pl’ [-Wunused-variable]
4242 | double pl=0;
| ^~
SPSOCODE.cpp:4243:10: warning: unused variable ‘tol’ [-Wunused-variable]
4243 | double tol=.005;
| ^~~
SPSOCODE.cpp:4258:7: warning: unused variable ‘Count’ [-Wunused-variable]
4258 | int Count=0;
| ^~~~~
SPSOCODE.cpp:4268:7: warning: unused variable ‘nREP’ [-Wunused-variable]
4268 | int nREP=0;
| ^~~~
SPSOCODE.cpp:4294:7: warning: unused variable ‘m’ [-Wunused-variable]
4294 | int m=0;
| ^
SPSOCODE.cpp:4311:7: warning: variable ‘STOPPED’ set but not used [-Wunused-but-set-variable]
4311 | int STOPPED=0;
| ^~~~~~~
SPSOCODE.cpp:4312:7: warning: unused variable ‘i’ [-Wunused-variable]
4312 | int i=0;
| ^
SPSOCODE.cpp:4314:10: warning: unused variable ‘min1’ [-Wunused-variable]
4314 | double min1=0;
| ^~~~
SPSOCODE.cpp:4318:7: warning: unused variable ‘nRep’ [-Wunused-variable]
4318 | int nRep=0;
| ^~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Phase12Compare.so RcppExports.o SPSOCODE.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp94OcxA/R.INSTALL2aa4f33c52f01b/Phase12Compare/src'
make[1]: Entering directory '/tmp/Rtmp94OcxA/R.INSTALL2aa4f33c52f01b/Phase12Compare/src'
make[1]: Leaving directory '/tmp/Rtmp94OcxA/R.INSTALL2aa4f33c52f01b/Phase12Compare/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Phase12Compare/00new/Phase12Compare/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Phase12Compare’
finding HTML links ... done
AssignEffTox html
AssignEffToxUT html
GETBIN html
GetDesire html
GetEfftoxContour html
GetEfftoxUt html
GetPriorsSPSO html
GetSpsoContour html
GetSpsoUt html
ReturnOpt html
RunAdaptiveEffToxTrialCORR html
RunAdaptiveEffToxTrialCORRCONTOUR html
SimEfftoxContour html
SimEfftoxUt html
SimSpsoContour html
SimSpsoUt html
UTEFFTOX html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Phase12Compare)