* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PepMapViz’ ...
** this is package ‘PepMapViz’ version ‘1.1.0’
** package ‘PepMapViz’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PepMapViz’
    finding HTML links ... done
    calculate_Area                          html  
    calculate_PSM                           html  
    calculate_all_Area                      html  
    calculate_all_PSM                       html  
    combine_files_from_folder               html  
    convert_to_regex_pattern                html  
    create_peptide_plot                     html  
    match_and_calculate_positions           html  
    obtain_mod                              html  
    obtain_mod_Comet                        html  
    obtain_mod_DIANN                        html  
    obtain_mod_MSFragger                    html  
    obtain_mod_Maxquant                     html  
    obtain_mod_PEAKS                        html  
    obtain_mod_Skyline                      html  
    obtain_mod_Spectronaut                  html  
    obtain_mod_mzIdenML                     html  
    obtain_mod_mzTab                        html  
    peptide_quantification                  html  
    run_pepmap_app                          html  
    strip_sequence                          html  
    strip_sequence_Comet                    html  
    strip_sequence_DIANN                    html  
    strip_sequence_MSFragger                html  
    strip_sequence_Maxquant                 html  
    strip_sequence_PEAKS                    html  
    strip_sequence_Skyline                  html  
    strip_sequence_Spectronaut              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PepMapViz)