* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PeakSegJoint’ ...
** this is package ‘PeakSegJoint’ version ‘2024.12.4’
** package ‘PeakSegJoint’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7m6in1/R.INSTALL11ec096fd00797/PeakSegJoint/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c OptimalPoissonLoss.c -o OptimalPoissonLoss.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PeakSegJoint.c -o PeakSegJoint.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PeakSegJointFaster.c -o PeakSegJointFaster.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PeakSegJoint_interface.c -o PeakSegJoint_interface.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c binSum.c -o binSum.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c clusterPeaks.c -o clusterPeaks.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c multiClusterPeaks.c -o multiClusterPeaks.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c profile.c -o profile.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PeakSegJoint.so OptimalPoissonLoss.o PeakSegJoint.o PeakSegJointFaster.o PeakSegJoint_interface.o binSum.o clusterPeaks.o multiClusterPeaks.o profile.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7m6in1/R.INSTALL11ec096fd00797/PeakSegJoint/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7m6in1/R.INSTALL11ec096fd00797/PeakSegJoint/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7m6in1/R.INSTALL11ec096fd00797/PeakSegJoint/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PeakSegJoint/00new/PeakSegJoint/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PeakSegJoint’
    finding HTML links ... done
    ConvertModelList                        html  
    GeomTallRect                            html  
    H3K27ac.TDH.MMM4                        html  
    H3K36me3.AM.immune.chunk21              html  
    H3K36me3.TDH.other.chunk1               html  
    H3K4me3.PGP.immune.chunk2               html  
    H3K4me3.TDH.other.chunk8                html  
    PeakErrorSamples                        html  
    PeakSegJointError                       html  
    PeakSegJointFaster                      html  
    PeakSegJointFasterOne                   html  
    PeakSegJointHeuristic                   html  
    PeakSegJointHeuristicStep1              html  
    PeakSegJointHeuristicStep2              html  
    PeakSegJointSeveral                     html  
    PoissonLoss                             html  
    ProfileList                             html  
    binSum                                  html  
    chr7.peaks                              html  
    clusterPeaks                            html  
    demo.profiles                           html  
    featureMatrixJoint                      html  
    multiClusterPeaks                       html  
    overflow.list                           html  
    peak.at.profile.end                     html  
    peak1.infeasible                        html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PeakSegJoint)