* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PeakSegDisk’ ...
** package ‘PeakSegDisk’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpIALwt2/R.INSTALL20c22d24f59107/PeakSegDisk/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PeakSegFPOPLog.cpp -o PeakSegFPOPLog.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c funPieceListLog.cpp -o funPieceListLog.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c interface.cpp -o interface.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PeakSegDisk.so PeakSegFPOPLog.o funPieceListLog.o interface.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIALwt2/R.INSTALL20c22d24f59107/PeakSegDisk/src'
make[1]: Entering directory '/tmp/RtmpIALwt2/R.INSTALL20c22d24f59107/PeakSegDisk/src'
make[1]: Leaving directory '/tmp/RtmpIALwt2/R.INSTALL20c22d24f59107/PeakSegDisk/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PeakSegDisk/00new/PeakSegDisk/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PeakSegDisk’
    finding HTML links ... done
    ChIPreads                               html  
    Mono27ac                                html  
    PeakSegFPOP_df                          html  
    PeakSegFPOP_dir                         html  
    PeakSegFPOP_file                        html  
    PeakSegFPOP_vec                         html  
    coef.PeakSegFPOP_df                     html  
    coef.PeakSegFPOP_dir                    html  
    col.name.list                           html  
    fread.first                             html  
    fread.last                              html  
    plot.PeakSegFPOP_df                     html  
    plot.PeakSegFPOP_dir                    html  
    sequentialSearch_dir                    html  
    summary.PeakSegFPOP_dir                 html  
    wc2int                                  html  
    writeBedGraph                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘PeakSegDisk’ as ‘PeakSegDisk_2023.11.27_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (PeakSegDisk)