* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PTSDdiag’ ...
** this is package ‘PTSDdiag’ version ‘0.5.0’
** package ‘PTSDdiag’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PTSDdiag’
    finding HTML links ... done
    analyze_best_six_symptoms_four_required
                                            html  
    analyze_best_six_symptoms_four_required_clusters
                                            html  
    apply_symptom_combinations              html  
    as_definitions                          html  
    as_set_matrix                           html  
    ba_ci                                   html  
    binarize_data                           html  
    bootstrap_stability                     html  
    calculate_ptsd_total                    html  
    chance_baseline                         html  
    check_pcl5_data                         html  
    compare_diagnostic_systems              html  
    compare_optimizations                   html  
    compare_rule_forms                      html  
    compute_plateau                         html  
    create_caps5_diagnosis                  html  
    create_icd11_diagnosis                  html  
    create_ptsd_diagnosis_binarized         html  
    create_ptsd_diagnosis_nonbinarized      html  
    create_readable_summary                 html  
    cross_validation                        html  
    diagnostic_metrics                      html  
    diagnostic_metrics_family               html  
    evaluate_definitions                    html  
    evaluate_sets                           html  
    exact_ci                                html  
    extract_definitions                     html  
    five_number                             html  
    fmt_est_ci                              html  
    fmt_ratio_ci                            html  
    holdout_validation                      html  
    icd11_items                             html  
    icd11_performance                       html  
    kappa_ci                                html  
    lr_ci                                   html  
    n_candidates                            html  
    optimize_combinations                   html  
    optimize_combinations_clusters          html  
    pcl5_item_labels                        html  
    plot_symptom_frequency                  html  
    plot_symptom_selection                  html  
    print.ptsdiag_comparison                html  
    print.ptsdiag_plateau                   html  
    print.ptsdiag_rule_forms                html  
    print.ptsdiag_stability                 html  
    print.ptsdiag_transport                 html  
    read_combinations                       html  
    read_transport                          html  
    rename_caps5_columns                    html  
    rename_ptsd_columns                     html  
    score_all_combinations                  html  
    set_id_to_items                         html  
    simulated_ptsd                          html  
    simulated_ptsd_genpop                   html  
    summarize_ptsd                          html  
    summarize_ptsd_changes                  html  
    summarize_top_combinations              html  
    symptom_frequency                       html  
    symptom_selection                       html  
    transport_plateau                       html  
    wilson_ci                               html  
    write_combinations                      html  
    write_transport                         html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PTSDdiag)