* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PRECAST’ ...
** package ‘PRECAST’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmptTM2Ro/R.INSTALL1b029e3fb6468f/PRECAST/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-DARMA_64BIT_WORD=1" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-DARMA_64BIT_WORD=1" -fpic -g -O2 -Wall -pedantic -mtune=native -c getNB_fast.cpp -o getNB_fast.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-DARMA_64BIT_WORD=1" -fpic -g -O2 -Wall -pedantic -mtune=native -c idrsc2.cpp -o idrsc2.o
idrsc2.cpp: In function ‘void runICM_sp1(const arma::field<arma::Mat<double> >&, arma::field<arma::Mat<double> >&, arma::field<arma::Col<long long int> >&, const MATTYPE&, const MATTYPE&, const MATTYPE&, const CUBETYPE&, CUBETYPE&, const arma::field<arma::SpMat<double> >&, const arma::field<arma::SpMat<double> >&, const VECTYPE&, const VECTYPE&, VECTYPE&, int, const bool&, const bool&, arma::field<arma::Mat<double> >&, arma::field<arma::Mat<double> >&, arma::field<arma::Cube<double> >&, arma::field<arma::Cube<double> >&, arma::field<arma::Cube<double> >&, arma::field<arma::Cube<double> >&, arma::field<arma::Cube<double> >&, arma::field<arma::Cube<double> >&, float&)’:
idrsc2.cpp:323:7: warning: unused variable ‘i’ [-Wunused-variable]
323 | int i, iter, k, n;
| ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-DARMA_64BIT_WORD=1" -fpic -g -O2 -Wall -pedantic -mtune=native -c mt_paral_job.cpp -o mt_paral_job.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-DARMA_64BIT_WORD=1" -fpic -g -O2 -Wall -pedantic -mtune=native -c utilMultIntcluster.cpp -o utilMultIntcluster.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-DARMA_64BIT_WORD=1" -fpic -g -O2 -Wall -pedantic -mtune=native -c wpca.cpp -o wpca.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PRECAST.so RcppExports.o getNB_fast.o idrsc2.o mt_paral_job.o utilMultIntcluster.o wpca.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmptTM2Ro/R.INSTALL1b029e3fb6468f/PRECAST/src'
make[1]: Entering directory '/tmp/RtmptTM2Ro/R.INSTALL1b029e3fb6468f/PRECAST/src'
make[1]: Leaving directory '/tmp/RtmptTM2Ro/R.INSTALL1b029e3fb6468f/PRECAST/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PRECAST/00new/PRECAST/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘PRECAST’
finding HTML links ... done
AddAdjList html
finding level-2 HTML links ... done
AddParSetting html
AddTSNE html
AddUMAP html
Add_embed html
CreateiDRSCObject html
Human_HK_genes html
ICM.EM_structure html
IntegrateSpaData html
Mouse_HK_genes html
PObj html
PRECAST html
PRECASTObj html
SpaPlot html
boxPlot html
chooseColors html
coordinate_rotate html
dimPlot html
doHeatmap html
drawFigs html
featurePlot html
firstup html
getAdj_fixedNumber html
getAdj_reg html
idrsc html
model_set html
plot_RGB html
plot_scatter html
selectIntFeatures html
selectModel html
volinPlot_real html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PRECAST)