* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PQLseq’ ...
** package ‘PQLseq’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpgcKKcm/R.INSTALL258af6c37864d/PQLseq/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PQLseq.cpp -o PQLseq.o
PQLseq.cpp: In function ‘SEXPREC* AI(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
PQLseq.cpp:61:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   61 |                 for(size_t i=1; i<=numK; ++i) {
      |                                 ~^~~~~~
PQLseq.cpp:109:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  109 |                         for(size_t i=0; i<numK2; ++i) {
      |                                         ~^~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PQLseq.so PQLseq.o RcppExports.o rcpparma_hello_world.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpgcKKcm/R.INSTALL258af6c37864d/PQLseq/src'
make[1]: Entering directory '/tmp/RtmpgcKKcm/R.INSTALL258af6c37864d/PQLseq/src'
make[1]: Leaving directory '/tmp/RtmpgcKKcm/R.INSTALL258af6c37864d/PQLseq/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PQLseq/00new/PQLseq/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PQLseq’
    finding HTML links ... done
    ExampleBSseq                            html  
    ExampleRNAseq                           html  
    PQLseq-package                          html  
    pqlseq                                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘PQLseq’ as ‘PQLseq_1.2.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (PQLseq)