* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PHSMM’ ...
** this is package ‘PHSMM’ version ‘1.0’
** package ‘PHSMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHMCynN/R.INSTALL6da2b5ecd9344/PHSMM/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nll_Rcpp.cpp -o nll_Rcpp.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PHSMM.so RcppExports.o nll_Rcpp.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHMCynN/R.INSTALL6da2b5ecd9344/PHSMM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHMCynN/R.INSTALL6da2b5ecd9344/PHSMM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHMCynN/R.INSTALL6da2b5ecd9344/PHSMM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PHSMM/00new/PHSMM/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PHSMM’
    finding HTML links ... done
    bern                                    html  
    decodeHSMM                              html  
    muskox                                  html  
    n2wHSMM                                 html  
    nll_Rcpp                                html  
    npllHSMM                                html  
    plotDw                                  html  
    pmleHSMM                                html  
    pseudoResHSMM                           html  
    tpmHMM                                  html  
    w2nHSMM                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PHSMM)