- using R version 4.4.1 Patched (2024-08-05 r86980)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-3) 14.2.0
GNU Fortran (Debian 14.2.0-3) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘PGRdup/DESCRIPTION’ ... OK
- this is package ‘PGRdup’ version ‘0.2.3.9’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘PGRdup’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/17s] OK
- checking Rd files ... [0s/1s] NOTE
checkRd: (-1) GN1000.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:8: Lost braces
8 | columns(fields): \itemize{ \item{CommonName}{ : }{Common name}
| ^
checkRd: (-1) GN1000.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:9: Lost braces
9 | \item{BotanicalName}{ : }{Botanical name} \item{NationalID}{ : }{NBPGR
| ^
checkRd: (-1) GN1000.Rd:9-10: Lost braces
9 | \item{BotanicalName}{ : }{Botanical name} \item{NationalID}{ : }{NBPGR
| ^
checkRd: (-1) GN1000.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:10: Lost braces
10 | National identifier} \item{CollNo}{ : }{Collector number} \item{DonorID}{ :
| ^
checkRd: (-1) GN1000.Rd:10-11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:11: Lost braces
11 | }{Donor ID} \item{OtherID1}{ : }{Other ID field 1} \item{OtherID2}{ :
| ^
checkRd: (-1) GN1000.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:11: Lost braces
11 | }{Donor ID} \item{OtherID1}{ : }{Other ID field 1} \item{OtherID2}{ :
| ^
checkRd: (-1) GN1000.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:12: Lost braces
12 | }{Other ID field 2} \item{BioStatus}{ : }{Biological status}
| ^
checkRd: (-1) GN1000.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:12: Lost braces
12 | }{Other ID field 2} \item{BioStatus}{ : }{Biological status}
| ^
checkRd: (-1) GN1000.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GN1000.Rd:13: Lost braces
13 | \item{SourceCountry}{ : }{Country of origin} \item{TransferYear}{ : }{Year
| ^
checkRd: (-1) GN1000.Rd:13-14: Lost braces
13 | \item{SourceCountry}{ : }{Country of origin} \item{TransferYear}{ : }{Year
| ^
checkRd: (-1) ReviewProbDup.Rd:35: Lost braces
35 | \item{insert.blanks}{logical. If \code{TRUE}, inserts a row of /code{NAs}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/2s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [52s/69s] OK
- checking PDF version of manual ... [5s/8s] OK
- checking HTML version of manual ... [1s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE