* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PEPBVS’ ...
** package ‘PEPBVS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp0BVehm/R.INSTALL26e32e569925d3/PEPBVS/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags` -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags` -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c auxiliary_code.cpp -o auxiliary_code.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o PEPBVS.so RcppExports.o auxiliary_code.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp0BVehm/R.INSTALL26e32e569925d3/PEPBVS/src'
make[1]: Entering directory '/tmp/Rtmp0BVehm/R.INSTALL26e32e569925d3/PEPBVS/src'
make[1]: Leaving directory '/tmp/Rtmp0BVehm/R.INSTALL26e32e569925d3/PEPBVS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-PEPBVS/00new/PEPBVS/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PEPBVS’
    finding HTML links ... done
    PEPBVS-package                          html  
    UScrime_data                            html  
    full_enumeration_pep                    html  
    image.pep                               html  
    mc3_pep                                 html  
    plot.pep                                html  
    predict.pep                             html  
    print.pep                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘PEPBVS’ as ‘PEPBVS_1.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (PEPBVS)