* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PCMBase’ ...
** this is package ‘PCMBase’ version ‘1.2.15’
** package ‘PCMBase’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘PCMBase’
    finding HTML links ... done
    Args_MixedGaussian_MGPMDefaultModelTypes
                                            html  
    Args_MixedGaussian_MGPMScalarOUType     html  
    Args_MixedGaussian_MGPMSurfaceOUType    html  
    FormatCellAsLatex                       html  
    FormatTableAsLatex                      html  
    MGPMScalarOUType                        html  
    MGPMSurfaceOUType                       html  
    MatchListMembers                        html  
    MixedGaussian                           html  
    MixedGaussianTemplate                   html  
    PCM                                     html  
    PCMAbCdEf                               html  
    PCMAddToListAttribute                   html  
    PCMApplyTransformation                  html  
    PCMBaseIsADevRelease                    html  
    PCMBaseTestObjects                      html  
    PCMColorPalette                         html  
    PCMCombineListAttribute                 html  
    PCMCond.GaussianPCM                     html  
    PCMCond                                 html  
    PCMCondVOU                              html  
    PCMCreateLikelihood                     html  
    PCMDefaultModelTypes                    html  
    PCMDefaultObject                        html  
    PCMDescribe                             html  
    PCMDescribeParameters                   html  
    PCMExtractDimensions                    html  
    PCMExtractRegimes                       html  
    PCMFindMethod                           html  
    PCMFixParameter                         html  
    PCMGenerateModelTypes                   html  
    PCMGenerateParameterizations            html  
    PCMGetAttribute                         html  
    PCMGetVecParamsRegimesAndModels         html  
    PCMInfo                                 html  
    PCMLik                                  html  
    PCMLikDmvNorm                           html  
    PCMLikTrace                             html  
    PCMListMembers                          html  
    PCMListParameterizations                html  
    PCMLmr                                  html  
    PCMMapModelTypesToRegimes               html  
    PCMMean                                 html  
    PCMMeanAtTime                           html  
    PCMModelTypes                           html  
    PCMModels                               html  
    PCMNumRegimes                           html  
    PCMNumTraits                            html  
    PCMOptions                              html  
    PCMPExpxMeanExp                         html  
    PCMPLambdaP_1                           html  
    PCMPairSums                             html  
    PCMParam                                html  
    PCMParamBindRegimeParams                html  
    PCMParamCount                           html  
    PCMParamGetShortVector                  html  
    PCMParamLoadOrStore                     html  
    PCMParamLocateInShortVector             html  
    PCMParamLowerLimit                      html  
    PCMParamRandomVecParams                 html  
    PCMParamSetByName                       html  
    PCMParamType                            html  
    PCMParamUpperLimit                      html  
    PCMParentClasses                        html  
    PCMParseErrorMessage                    html  
    PCMPlotGaussianDensityGrid2D            html  
    PCMPlotGaussianSample2D                 html  
    PCMPlotMath                             html  
    PCMPlotTraitData2D                      html  
    PCMPresentCoordinates                   html  
    PCMRegimes                              html  
    PCMSetAttribute                         html  
    PCMSim                                  html  
    PCMSpecify                              html  
    PCMTable                                html  
    PCMTableParameterizations               html  
    PCMTrajectory                           html  
    PCMTree                                 html  
    PCMTreeBackbonePartition                html  
    PCMTreeDropClade                        html  
    PCMTreeDtNodes                          html  
    PCMTreeEdgeTimes                        html  
    PCMTreeEvalNestedEDxOnTree              html  
    PCMTreeExtractClade                     html  
    PCMTreeGetBranchLength                  html  
    PCMTreeGetDaughters                     html  
    PCMTreeGetLabels                        html  
    PCMTreeGetParent                        html  
    PCMTreeGetPartNames                     html  
    PCMTreeGetPartRegimes                   html  
    PCMTreeGetPartition                     html  
    PCMTreeGetPartsForNodes                 html  
    PCMTreeGetRegimesForEdges               html  
    PCMTreeGetRegimesForNodes               html  
    PCMTreeGetTipsInPart                    html  
    PCMTreeGetTipsInRegime                  html  
    PCMTreeInsertSingletons                 html  
    PCMTreeJumps                            html  
    PCMTreeListAllPartitions                html  
    PCMTreeListCladePartitions              html  
    PCMTreeListDescendants                  html  
    PCMTreeListRootPaths                    html  
    PCMTreeLocateEpochOnBranches            html  
    PCMTreeLocateMidpointsOnBranches        html  
    PCMTreeMatchLabels                      html  
    PCMTreeMatrixNodesInSamePart            html  
    PCMTreeNearestNodesToEpoch              html  
    PCMTreeNodeTimes                        html  
    PCMTreeNumNodes                         html  
    PCMTreeNumParts                         html  
    PCMTreeNumTips                          html  
    PCMTreePlot                             html  
    PCMTreePostorder                        html  
    PCMTreePreorder                         html  
    PCMTreeSetLabels                        html  
    PCMTreeSetPartRegimes                   html  
    PCMTreeSetPartition                     html  
    PCMTreeSetRegimesForEdges               html  
    PCMTreeSplitAtNode                      html  
    PCMTreeTableAncestors                   html  
    PCMTreeToString                         html  
    PCMTreeVCV                              html  
    PCMUnfixParameter                       html  
    PCMVar                                  html  
    PCMVarAtTime                            html  
    RequireSuggestedPackages                html  
    TruePositiveRate                        html  
    UpperTriFactor                          html  
    White                                   html  
    as.MixedGaussian                        html  
    dataFig3                                html  
    is.GaussianPCM                          html  
    is.MixedGaussian                        html  
    is.PCM                                  html  
    is.PCMTree                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PCMBase)