* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘OutbreakR’ ... ** this is package ‘OutbreakR’ version ‘0.1.0’ ** package ‘OutbreakR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘OutbreakR’ finding HTML links ... done attack_rate html attributable_fraction_exposed html attributable_risk html basic_reproduction_number html case_fatality_rate html effective_reproduction_number html herd_immunity_threshold html incidence_proportion html incidence_rate html mortality_rate html number_needed_to_harm html number_needed_to_treat html odds_ratio html outbreak_table html population_attributable_fraction html prevalence html print.outbreak_attack_rate html print.outbreak_attack_rate_grouped html print.outbreak_attributable_fraction_exposed html print.outbreak_attributable_fraction_exposed_grouped html print.outbreak_attributable_risk html print.outbreak_attributable_risk_grouped html print.outbreak_basic_reproduction_number html print.outbreak_case_fatality_rate html print.outbreak_case_fatality_rate_grouped html print.outbreak_effective_reproduction_number html print.outbreak_incidence_proportion html print.outbreak_incidence_rate html print.outbreak_incidence_rate_grouped html print.outbreak_mortality_rate html print.outbreak_mortality_rate_grouped html print.outbreak_number_needed_to_harm html print.outbreak_number_needed_to_harm_grouped html print.outbreak_number_needed_to_treat html print.outbreak_number_needed_to_treat_grouped html print.outbreak_odds_ratio html print.outbreak_odds_ratio_grouped html print.outbreak_population_attributable_fraction html print.outbreak_population_attributable_fraction_grouped html print.outbreak_prevalence html print.outbreak_prevalence_grouped html print.outbreak_rate_ratio html print.outbreak_risk_ratio html print.outbreak_risk_ratio_grouped html print.outbreak_secondary_attack_rate html print.outbreak_secondary_attack_rate_grouped html print.outbreak_table html print.outbreak_table_grouped html print.outbreak_vaccine_effectiveness html print.outbreak_vaccine_effectiveness_grouped html print.outbreak_validation html print.summary.outbreak_attributable_fraction_exposed html print.summary.outbreak_attributable_fraction_exposed_grouped html print.summary.outbreak_attributable_risk html print.summary.outbreak_attributable_risk_grouped html print.summary.outbreak_basic_reproduction_number html print.summary.outbreak_case_fatality_rate html print.summary.outbreak_case_fatality_rate_grouped html print.summary.outbreak_effective_reproduction_number html print.summary.outbreak_incidence_proportion html print.summary.outbreak_incidence_rate html print.summary.outbreak_incidence_rate_grouped html print.summary.outbreak_mortality_rate html print.summary.outbreak_mortality_rate_grouped html print.summary.outbreak_number_needed_to_harm html print.summary.outbreak_number_needed_to_harm_grouped html print.summary.outbreak_number_needed_to_treat html print.summary.outbreak_number_needed_to_treat_grouped html print.summary.outbreak_odds_ratio html print.summary.outbreak_odds_ratio_grouped html print.summary.outbreak_population_attributable_fraction html print.summary.outbreak_population_attributable_fraction_grouped html print.summary.outbreak_prevalence html print.summary.outbreak_prevalence_grouped html print.summary.outbreak_risk_ratio html print.summary.outbreak_risk_ratio_grouped html print.summary.outbreak_table html print.summary.outbreak_table_grouped html print.summary.outbreak_vaccine_effectiveness html print.summary.outbreak_vaccine_effectiveness_grouped html print.summary_outbreak_rate_ratio html rate_ratio html risk_ratio html secondary_attack_rate html summary.outbreak_attributable_fraction_exposed html summary.outbreak_attributable_fraction_exposed_grouped html summary.outbreak_attributable_risk html summary.outbreak_attributable_risk_grouped html summary.outbreak_basic_reproduction_number html summary.outbreak_case_fatality_rate html summary.outbreak_case_fatality_rate_grouped html summary.outbreak_effective_reproduction_number html summary.outbreak_incidence_proportion html summary.outbreak_incidence_rate html summary.outbreak_incidence_rate_grouped html summary.outbreak_mortality_rate html summary.outbreak_mortality_rate_grouped html summary.outbreak_number_needed_to_harm html summary.outbreak_number_needed_to_harm_grouped html summary.outbreak_number_needed_to_treat html summary.outbreak_number_needed_to_treat_grouped html summary.outbreak_odds_ratio html summary.outbreak_odds_ratio_grouped html summary.outbreak_population_attributable_fraction html summary.outbreak_population_attributable_fraction_grouped html summary.outbreak_prevalence html summary.outbreak_prevalence_grouped html summary.outbreak_rate_ratio html summary.outbreak_risk_ratio html summary.outbreak_risk_ratio_grouped html summary.outbreak_table html summary.outbreak_table_grouped html summary.outbreak_vaccine_effectiveness html summary.outbreak_vaccine_effectiveness_grouped html vaccine_effectiveness html validate_linelist html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OutbreakR)