* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘OutbreakR’ ...
** this is package ‘OutbreakR’ version ‘0.1.0’
** package ‘OutbreakR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘OutbreakR’
finding HTML links ... done
attack_rate html
attributable_fraction_exposed html
attributable_risk html
basic_reproduction_number html
case_fatality_rate html
effective_reproduction_number html
herd_immunity_threshold html
incidence_proportion html
incidence_rate html
mortality_rate html
number_needed_to_harm html
number_needed_to_treat html
odds_ratio html
outbreak_table html
population_attributable_fraction html
prevalence html
print.outbreak_attack_rate html
print.outbreak_attack_rate_grouped html
print.outbreak_attributable_fraction_exposed
html
print.outbreak_attributable_fraction_exposed_grouped
html
print.outbreak_attributable_risk html
print.outbreak_attributable_risk_grouped
html
print.outbreak_basic_reproduction_number
html
print.outbreak_case_fatality_rate html
print.outbreak_case_fatality_rate_grouped
html
print.outbreak_effective_reproduction_number
html
print.outbreak_incidence_proportion html
print.outbreak_incidence_rate html
print.outbreak_incidence_rate_grouped html
print.outbreak_mortality_rate html
print.outbreak_mortality_rate_grouped html
print.outbreak_number_needed_to_harm html
print.outbreak_number_needed_to_harm_grouped
html
print.outbreak_number_needed_to_treat html
print.outbreak_number_needed_to_treat_grouped
html
print.outbreak_odds_ratio html
print.outbreak_odds_ratio_grouped html
print.outbreak_population_attributable_fraction
html
print.outbreak_population_attributable_fraction_grouped
html
print.outbreak_prevalence html
print.outbreak_prevalence_grouped html
print.outbreak_rate_ratio html
print.outbreak_risk_ratio html
print.outbreak_risk_ratio_grouped html
print.outbreak_secondary_attack_rate html
print.outbreak_secondary_attack_rate_grouped
html
print.outbreak_table html
print.outbreak_table_grouped html
print.outbreak_vaccine_effectiveness html
print.outbreak_vaccine_effectiveness_grouped
html
print.outbreak_validation html
print.summary.outbreak_attributable_fraction_exposed
html
print.summary.outbreak_attributable_fraction_exposed_grouped
html
print.summary.outbreak_attributable_risk
html
print.summary.outbreak_attributable_risk_grouped
html
print.summary.outbreak_basic_reproduction_number
html
print.summary.outbreak_case_fatality_rate
html
print.summary.outbreak_case_fatality_rate_grouped
html
print.summary.outbreak_effective_reproduction_number
html
print.summary.outbreak_incidence_proportion
html
print.summary.outbreak_incidence_rate html
print.summary.outbreak_incidence_rate_grouped
html
print.summary.outbreak_mortality_rate html
print.summary.outbreak_mortality_rate_grouped
html
print.summary.outbreak_number_needed_to_harm
html
print.summary.outbreak_number_needed_to_harm_grouped
html
print.summary.outbreak_number_needed_to_treat
html
print.summary.outbreak_number_needed_to_treat_grouped
html
print.summary.outbreak_odds_ratio html
print.summary.outbreak_odds_ratio_grouped
html
print.summary.outbreak_population_attributable_fraction
html
print.summary.outbreak_population_attributable_fraction_grouped
html
print.summary.outbreak_prevalence html
print.summary.outbreak_prevalence_grouped
html
print.summary.outbreak_risk_ratio html
print.summary.outbreak_risk_ratio_grouped
html
print.summary.outbreak_table html
print.summary.outbreak_table_grouped html
print.summary.outbreak_vaccine_effectiveness
html
print.summary.outbreak_vaccine_effectiveness_grouped
html
print.summary_outbreak_rate_ratio html
rate_ratio html
risk_ratio html
secondary_attack_rate html
summary.outbreak_attributable_fraction_exposed
html
summary.outbreak_attributable_fraction_exposed_grouped
html
summary.outbreak_attributable_risk html
summary.outbreak_attributable_risk_grouped
html
summary.outbreak_basic_reproduction_number
html
summary.outbreak_case_fatality_rate html
summary.outbreak_case_fatality_rate_grouped
html
summary.outbreak_effective_reproduction_number
html
summary.outbreak_incidence_proportion html
summary.outbreak_incidence_rate html
summary.outbreak_incidence_rate_grouped
html
summary.outbreak_mortality_rate html
summary.outbreak_mortality_rate_grouped
html
summary.outbreak_number_needed_to_harm
html
summary.outbreak_number_needed_to_harm_grouped
html
summary.outbreak_number_needed_to_treat
html
summary.outbreak_number_needed_to_treat_grouped
html
summary.outbreak_odds_ratio html
summary.outbreak_odds_ratio_grouped html
summary.outbreak_population_attributable_fraction
html
summary.outbreak_population_attributable_fraction_grouped
html
summary.outbreak_prevalence html
summary.outbreak_prevalence_grouped html
summary.outbreak_rate_ratio html
summary.outbreak_risk_ratio html
summary.outbreak_risk_ratio_grouped html
summary.outbreak_table html
summary.outbreak_table_grouped html
summary.outbreak_vaccine_effectiveness
html
summary.outbreak_vaccine_effectiveness_grouped
html
vaccine_effectiveness html
validate_linelist html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OutbreakR)