* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘NPBayesImputeCat’ ...
** this is package ‘NPBayesImputeCat’ version ‘0.6’
** package ‘NPBayesImputeCat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8QH3hx/R.INSTALL1a452e69f5eb82/NPBayesImputeCat/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CData.cpp -o CData.o
In file included from CData.cpp:26:
In static member function ‘static void* CArrayND<T>::flat2arrayND_ln(void*, int, int, int*) [with T = int]’,
inlined from ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’ at CArrayND.h:77:25:
CArrayND.h:88:36: warning: ‘lengths’ may be used uninitialized [-Wmaybe-uninitialized]
88 | size[0] = lengths[0];
| ~~~~~~~~~^
CArrayND.h: In static member function ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’:
CArrayND.h:68:21: note: ‘lengths’ declared here
68 | int lengths[20];
| ^~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CEnv.cpp -o CEnv.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CLcm.cpp -o CLcm.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CParam.cpp -o CParam.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CTrace.cpp -o CTrace.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SpecialFunctions.cpp -o SpecialFunctions.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lczmain.cpp -o lczmain.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c margin_conditions.cpp -o margin_conditions.o
In file included from margin_conditions.cpp:23:
In static member function ‘static void* CArrayND<T>::flat2arrayND_ln(void*, int, int, int*) [with T = int]’,
inlined from ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’ at CArrayND.h:77:25:
CArrayND.h:88:36: warning: ‘lengths’ may be used uninitialized [-Wmaybe-uninitialized]
88 | size[0] = lengths[0];
| ~~~~~~~~~^
CArrayND.h: In static member function ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’:
CArrayND.h:68:21: note: ‘lengths’ declared here
68 | int lengths[20];
| ^~~~~~~
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o NPBayesImputeCat.so CData.o CEnv.o CLcm.o CParam.o CTrace.o RcppExports.o SpecialFunctions.o lczmain.o margin_conditions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8QH3hx/R.INSTALL1a452e69f5eb82/NPBayesImputeCat/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8QH3hx/R.INSTALL1a452e69f5eb82/NPBayesImputeCat/src'
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8QH3hx/R.INSTALL1a452e69f5eb82/NPBayesImputeCat/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-NPBayesImputeCat/00new/NPBayesImputeCat/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘NPBayesImputeCat’
finding HTML links ... done
CreateModel html
DPMPM_nozeros_imp html
DPMPM_nozeros_syn html
DPMPM_zeros_imp html
GetDataFrame html
GetMCZ html
Lcm html
MCZ html
NPBayesImputCat-package html
Rcpp_Lcm-class html
UpdateX html
X html
compute_probs html
fit_GLMs html
kstar_MCMCdiag html
marginal_compare_all_imp html
marginal_compare_all_syn html
pool_estimated_probs html
pool_fitted_GLMs html
ss16pusa_ds_MCZ html
ss16pusa_mi_MCZ html
ss16pusa_sample_nozeros html
ss16pusa_sample_nozeros_miss html
ss16pusa_sample_zeros html
ss16pusa_sample_zeros_miss html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NPBayesImputeCat)