* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘NPBayesImputeCat’ ...
** package ‘NPBayesImputeCat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpbV65hv/R.INSTALL12764f5b40a08b/NPBayesImputeCat/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CData.cpp -o CData.o
In file included from CData.cpp:26:
In static member function ‘static void* CArrayND<T>::flat2arrayND_ln(void*, int, int, int*) [with T = int]’,
inlined from ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’ at CArrayND.h:77:25:
CArrayND.h:88:36: warning: ‘lengths’ may be used uninitialized [-Wmaybe-uninitialized]
88 | size[0] = lengths[0];
| ~~~~~~~~~^
CArrayND.h: In static member function ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’:
CArrayND.h:68:21: note: ‘lengths’ declared here
68 | int lengths[20];
| ^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CEnv.cpp -o CEnv.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CLcm.cpp -o CLcm.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CParam.cpp -o CParam.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CTrace.cpp -o CTrace.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SpecialFunctions.cpp -o SpecialFunctions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lczmain.cpp -o lczmain.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c margin_conditions.cpp -o margin_conditions.o
In file included from margin_conditions.cpp:23:
In static member function ‘static void* CArrayND<T>::flat2arrayND_ln(void*, int, int, int*) [with T = int]’,
inlined from ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’ at CArrayND.h:77:25:
CArrayND.h:88:36: warning: ‘lengths’ may be used uninitialized [-Wmaybe-uninitialized]
88 | size[0] = lengths[0];
| ~~~~~~~~~^
CArrayND.h: In static member function ‘static void* CArrayND<T>::flat2arrayND(void*, int, int, ...) [with T = int]’:
CArrayND.h:68:21: note: ‘lengths’ declared here
68 | int lengths[20];
| ^~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o NPBayesImputeCat.so CData.o CEnv.o CLcm.o CParam.o CTrace.o RcppExports.o SpecialFunctions.o lczmain.o margin_conditions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpbV65hv/R.INSTALL12764f5b40a08b/NPBayesImputeCat/src'
make[1]: Entering directory '/tmp/RtmpbV65hv/R.INSTALL12764f5b40a08b/NPBayesImputeCat/src'
make[1]: Leaving directory '/tmp/RtmpbV65hv/R.INSTALL12764f5b40a08b/NPBayesImputeCat/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-NPBayesImputeCat/00new/NPBayesImputeCat/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘NPBayesImputeCat’
finding HTML links ... done
CreateModel html
DPMPM_nozeros_imp html
DPMPM_nozeros_syn html
DPMPM_zeros_imp html
GetDataFrame html
GetMCZ html
Lcm html
finding level-2 HTML links ... done
MCZ html
NPBayesImputCat-package html
Rcpp_Lcm-class html
UpdateX html
X html
compute_probs html
fit_GLMs html
kstar_MCMCdiag html
marginal_compare_all_imp html
marginal_compare_all_syn html
pool_estimated_probs html
pool_fitted_GLMs html
ss16pusa_ds_MCZ html
ss16pusa_mi_MCZ html
ss16pusa_sample_nozeros html
ss16pusa_sample_nozeros_miss html
ss16pusa_sample_zeros html
ss16pusa_sample_zeros_miss html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NPBayesImputeCat)