* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MinTriadic’ ...
** this is package ‘MinTriadic’ version ‘1.0.0’
** package ‘MinTriadic’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvmL2Fd/R.INSTALL2df12327b18421/MinTriadic/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MinTriadicClosure.cpp -o MinTriadicClosure.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/shared_ptr.hpp:17,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Vertex.h:8,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/DirectedVertex.h:6,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:12,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/lolog.h:6,
from MinTriadicClosure.h:5,
from MinTriadicClosure.cpp:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
326 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Vertex.h:7:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
354 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
365 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
423 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
430 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
432 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::refreshIds()’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1073:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1073 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In constructor ‘lolog::Directed::Directed(const lolog::Directed&, bool)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1109:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1109 | for(int i=0;i<net.verts.size();i++){
| ~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::reorderVertices(std::vector<int>)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1175:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1175 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::emptyGraph()’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1199:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1199 | for(int i=0;i < verts.size();i++){
| ~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::setAllDyadsMissing(std::vector<int>, bool)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1245:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1245 | for(int i=0;i<nodes.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1249:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1249 | for(int i=0;i<nodes.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::pair<int, int> lolog::Directed::randomEdge() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1372:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1372 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘boost::shared_ptr<std::vector<std::pair<int, int> > > lolog::Directed::edgelist() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1435:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1435 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘Rcpp::IntegerMatrix lolog::Directed::edgelistR(bool) const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1450:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1450 | for(int i=0;i<v->size();i++){
| ~^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1458:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1458 | for(int i=0;i<v->size();i++){
| ~^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<std::__cxx11::basic_string<char> > lolog::Directed::continVarNames() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1470:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<lolog::ContinAttrib>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1470 | for(int i=0;i<contMeta->size();i++)
| ~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::removeContinVariable(int)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1508:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1508 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::addContinVariable(const std::vector<double>&, lolog::ContinAttrib&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1515:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1515 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<std::__cxx11::basic_string<char> > lolog::Directed::discreteVarNames() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1522:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<lolog::DiscreteAttrib>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1522 | for(int i=0;i<disMeta->size();i++)
| ~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::removeDiscreteVariable(int)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1533:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1533 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<int> lolog::Directed::discreteVariableValues(int) const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1540:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1540 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<std::__cxx11::basic_string<char> > lolog::Directed::discreteVariable(int) const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1559:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1559 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::addDiscreteVariable(const std::vector<int>&, lolog::DiscreteAttrib&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1567:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::DirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1567 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::addDiscreteVariableR(SEXP, std::string)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1607:24: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1607 | if(vals.size() != this->size())
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1621:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1621 | for(int i=0;i<missing.size();i++){
| ~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘Rcpp::RObject lolog::Directed::getVariableR(std::string, bool)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1629:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1629 | for(int i=0;i<names.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1649:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1649 | for(int i=0;i<names.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Directed::setVariableR(SEXP, std::string)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1712:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1712 | for(int i=0;i<missing.size();i++){
| ~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::refreshIds()’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1750:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1750 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In constructor ‘lolog::Undirected::Undirected(const lolog::Undirected&, bool)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1789:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1789 | for(int i=0;i<net.verts.size();i++){
| ~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::reorderVertices(std::vector<int>)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1854:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1854 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::emptyGraph()’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1877:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1877 | for(int i=0;i < verts.size();i++){
| ~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::setAllDyadsMissing(std::vector<int>, bool)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1932:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1932 | for(int i=0;i<nodes.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1939:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1939 | for(int i=0;i<nodes.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::pair<int, int> lolog::Undirected::randomEdge() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2067:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2067 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘boost::shared_ptr<std::vector<std::pair<int, int> > > lolog::Undirected::edgelist() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2127:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2127 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘Rcpp::IntegerMatrix lolog::Undirected::edgelistR(bool) const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2144 | for(int i=0;i<v->size();i++){
| ~^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2152:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2152 | for(int i=0;i<v->size();i++){
| ~^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<std::__cxx11::basic_string<char> > lolog::Undirected::continVarNames() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2164:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<lolog::ContinAttrib>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2164 | for(int i=0;i<contMeta->size();i++)
| ~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::removeContinVariable(int)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2203:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2203 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::addContinVariable(const std::vector<double>&, lolog::ContinAttrib&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2210:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2210 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<std::__cxx11::basic_string<char> > lolog::Undirected::discreteVarNames() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2217:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<lolog::DiscreteAttrib>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2217 | for(int i=0;i<disMeta->size();i++)
| ~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::removeDiscreteVariable(int)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2228:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2228 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<int> lolog::Undirected::discreteVariableValues(int) const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2235:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2235 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘std::vector<std::__cxx11::basic_string<char> > lolog::Undirected::discreteVariable(int) const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2254:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2254 | for(int i=0;i<verts.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::addDiscreteVariable(const std::vector<int>&, lolog::DiscreteAttrib&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2262:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<boost::shared_ptr<lolog::UndirectedVertex> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2262 | for(int i=0;i<verts.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::addDiscreteVariableR(Rcpp::RObject, std::string)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2300:24: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2300 | if(vals.size() != this->size())
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2315:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2315 | for(int i=0;i<missing.size();i++){
| ~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘Rcpp::RObject lolog::Undirected::getVariableR(std::string, bool)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2323:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2323 | for(int i=0;i<names.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2343:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2343 | for(int i=0;i<names.size();i++)
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h: In member function ‘void lolog::Undirected::setVariableR(SEXP, std::string)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:2410:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2410 | for(int i=0;i<missing.size();i++){
| ~^~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:15:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/util.h: In instantiation of ‘int lolog::indexOf(const T&, const std::vector<T>&) [with T = std::__cxx11::basic_string<char>]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/BinaryNet.h:1620:28: required from here
1620 | int index = indexOf(name,discreteVarNames());
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/util.h:79:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
79 | for(int i=0;i<vec.size();i++){
| ~^~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Model.h:4,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/LatentOrderLikelihood.h:4,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/lolog.h:9:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h: In instantiation of ‘std::vector<double> lolog::BaseStat<Engine>::values() [with Engine = lolog::Undirected]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:394:27: required from ‘std::vector<double> lolog::Stat<NetworkEngine, StatEngine>::values() [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
394 | return stat.values();
| ~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:390:16: required from ‘std::vector<double> lolog::Stat<NetworkEngine, StatEngine>::vValues() [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
390 | return values();
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:389:33: required from here
389 | virtual std::vector<double> vValues(){
| ^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:482:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
482 | for(int i=0;i<this->stats.size();i++)
| ~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h: In instantiation of ‘double lolog::BaseStat<Engine>::logLik() [with Engine = lolog::Undirected]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:405:27: required from ‘double lolog::Stat<NetworkEngine, StatEngine>::logLik() [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
405 | return stat.logLik();
| ~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:401:16: required from ‘double lolog::Stat<NetworkEngine, StatEngine>::vLogLik() [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
401 | return logLik();
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:400:20: required from here
400 | virtual double vLogLik(){
| ^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
492 | for(int i=0;i<this->stats.size();i++)
| ~^~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Constraint.h:4,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/lolog.h:7:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Offset.h: In instantiation of ‘void lolog::BaseOffset<Engine>::rollback(const lolog::BinaryNet<Engine>&) [with Engine = lolog::Undirected]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:302:22: required from ‘void lolog::Stat<NetworkEngine, StatEngine>::rollback(const lolog::BinaryNet<Engine>&) [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
302 | stat.rollback(net);
| ~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:298:9: required from ‘void lolog::Stat<NetworkEngine, StatEngine>::vRollback(const lolog::BinaryNet<Engine>&) [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
298 | rollback(net);
| ^~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:297:18: required from here
297 | virtual void vRollback(const BinaryNet<NetworkEngine>& net){
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Offset.h:422:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
422 | for(int i=0;i<stats.size();i++){
| ~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Offset.h: In instantiation of ‘void lolog::BaseOffset<Engine>::resetLastStats() [with Engine = lolog::Undirected]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Offset.h:388:9: required from ‘void lolog::BaseOffset<Engine>::discreteVertexUpdate(const lolog::BinaryNet<Engine>&, const int&, const int&, const int&, const std::vector<int>&, const int&) [with Engine = lolog::Undirected]’
388 | resetLastStats();
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:269:34: required from ‘void lolog::Stat<NetworkEngine, StatEngine>::discreteVertexUpdate(const lolog::BinaryNet<Engine>&, const int&, const int&, const int&, const std::vector<int>&, const int&) [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
269 | stat.discreteVertexUpdate(net,vert,variable,newValue,order,actorIndex);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:264:9: required from ‘void lolog::Stat<NetworkEngine, StatEngine>::vDiscreteVertexUpdate(const lolog::BinaryNet<Engine>&, const int&, const int&, const int&, const std::vector<int>&, const int&) [with NetworkEngine = lolog::Undirected; StatEngine = lologext::MinTriadicClosure<lolog::Undirected>]’
264 | discreteVertexUpdate(net,vert,variable,newValue,order,actorIndex);
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Stat.h:262:18: required from here
262 | virtual void vDiscreteVertexUpdate(const BinaryNet<NetworkEngine>& net, const int& vert,
| ^~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include/Offset.h:416:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
416 | for(int i=0;i<stats.size();i++){
| ~^~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lolog/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MinTriadic.so MinTriadicClosure.o RcppExports.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvmL2Fd/R.INSTALL2df12327b18421/MinTriadic/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvmL2Fd/R.INSTALL2df12327b18421/MinTriadic/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvmL2Fd/R.INSTALL2df12327b18421/MinTriadic/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MinTriadic/00new/MinTriadic/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘MinTriadic’
finding HTML links ... done
minTriadicClosure html
registerMinTriadicClosure html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MinTriadic)