* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MicrobiomeStat’ ...
** this is package ‘MicrobiomeStat’ version ‘1.3’
** package ‘MicrobiomeStat’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for NLopt library...
NLopt not found. Package will compile without NLopt support.
To enable NLopt support, install NLopt library:
  - Ubuntu/Debian: sudo apt-get install libnlopt-dev
  - macOS: brew install nlopt
  - Fedora/RHEL: sudo dnf install NLopt-devel
Configuration complete.
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuunT65/R.INSTALL1f7f2f4f59a073/MicrobiomeStat/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ADMM.cpp -o ADMM.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bmdd_nlopt.cpp -o bmdd_nlopt.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nlopt_check.cpp -o nlopt_check.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MicrobiomeStat.so ADMM.o RcppExports.o bmdd_nlopt.o nlopt_check.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuunT65/R.INSTALL1f7f2f4f59a073/MicrobiomeStat/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuunT65/R.INSTALL1f7f2f4f59a073/MicrobiomeStat/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuunT65/R.INSTALL1f7f2f4f59a073/MicrobiomeStat/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MicrobiomeStat/00new/MicrobiomeStat/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘MicrobiomeStat’
    finding HTML links ... done
    DGP_OC                                  html  
    bmdd                                    html  
    bmdd.nlopt                              html  
    cscca.CV                                html  
    cscca                                   html  
    linda                                   html  
    linda.plot                              html  
    linda.wald.test                         html  
    smokers                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MicrobiomeStat)