* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘MethEvolSIM’ ... ** this is package ‘MethEvolSIM’ version ‘0.2.1’ ** package ‘MethEvolSIM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘MethEvolSIM’ finding HTML links ... done MeanSiteFChange_cherry html categorize_islandGlbSt html categorize_siteMethSt html cftpStepGenerator html combiStructureGenerator html compare_CherryFreqs html computeFitch_islandGlbSt html compute_fitch html compute_meanCor_i html compute_meanCor_ni html countSites_cherryMethDiff html count_upm html freqSites_cherryMethDiff html get_cherryDist html get_islandMeanFreqM html get_islandMeanFreqP html get_islandSDFreqM html get_islandSDFreqP html get_meanMeth_islands html get_nonislandMeanFreqM html get_nonislandMeanFreqP html get_nonislandSDFreqM html get_nonislandSDFreqP html get_parameterValues html get_siteFChange_cherry html mean_CherryFreqsChange_i html mean_TreeFreqsChange_i html pValue_CherryFreqsChange_i html simulate_evolData html simulate_initialData html singleStructureGenerator html treeMultiRegionSimulator html validate_dataAcrossTips html validate_data_cherryDist html validate_structureIndices html validate_tree html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MethEvolSIM)