* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MSCquartets’ ...
** package ‘MSCquartets’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpGwBett/R.INSTALL31d7d4728aedd8/MSCquartets/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c QuartetTallyCpp.cpp -o QuartetTallyCpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TINNIKcpp.cpp -o TINNIKcpp.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MSCquartets.so QuartetTallyCpp.o RcppExports.o TINNIKcpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpGwBett/R.INSTALL31d7d4728aedd8/MSCquartets/src'
make[1]: Entering directory '/tmp/RtmpGwBett/R.INSTALL31d7d4728aedd8/MSCquartets/src'
make[1]: Leaving directory '/tmp/RtmpGwBett/R.INSTALL31d7d4728aedd8/MSCquartets/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MSCquartets/00new/MSCquartets/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘MSCquartets’
finding HTML links ... done
BQinference html
HolmBonferroni html
M0 html
MSCquartets-package html
NANUQ html
NANUQdist html
QDC html
QDS html
T1density html
T3density html
TINNIK html
TINNIKdist html
WQDC html
WQDCrecursive html
WQDS html
WQDSAdjustLengths html
collapseEdges html
compatibleSplits html
cutDensity html
dataGeneTreeSample html
dataHeliconiusMartin html
dataYeastRokas html
estimateEdgeLengths html
expectedCFs html
initBquartets html
nexusDist html
nodeGroups html
pTableYeastRokas html
powerDivStat html
pvalHist html
quartetBTinferencePlot html
quartetCutMLE html
quartetCutTest html
quartetCutTestInd html
quartetDist html
quartetNetworkDist html
quartetStarTest html
quartetStarTestInd html
quartetTable html
quartetTableCollapse html
quartetTableDominant html
quartetTableParallel html
quartetTablePrint html
quartetTableResolved html
quartetTallyCpp html
quartetTestPlot html
quartetTreeErrorProb html
quartetTreeTest html
quartetTreeTestInd html
quartetWeightedDist html
simplexCoords html
simplexLabels html
simplexPoint html
simplexPrepare html
simplexSegment html
simplexText html
sortQuartetTableRows html
taxonNames html
topDist html
treeFromSplits html
treeOfBlobs html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MSCquartets)