• using R version 4.0.5 Patched (2021-03-31 r80182)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘MRFcov/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MRFcov’ version ‘1.0.38’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘MRFcov’ can be installed ... WARNING
  Found the following significant warnings:
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov.Rd:40: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov_spatial.Rd:42: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov_spatial.Rd:62: file link ‘smooth.construct2’ in package ‘mgcv’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov_spatial.Rd:112: file link ‘smooth.construct2’ in package ‘mgcv’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/bootstrap_MRF.Rd:46: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/cv_MRF_diag.Rd:74: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/cv_MRF_diag.Rd:135: file link ‘createFolds’ in package ‘caret’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/predict_MRFnetworks.Rd:70: file link ‘graph.adjacency’ in package ‘igraph’ does not exist and so has been treated as a topic
    Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/prep_MRF_covariates_spatial.Rd:22: file link ‘smooth.construct2’ in package ‘mgcv’ does not exist and so has been treated as a topic
  See https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/MRFcov-00install.html for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/23s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/14s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [25s/29s] OK
    Running ‘testthat.R’ [25s/28s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [54s/62s] OK
• checking PDF version of manual ... OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 WARNING