- using R version 4.0.5 Patched (2021-03-31 r80182)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘MRFcov/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘MRFcov’ version ‘1.0.38’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘MRFcov’ can be installed ... WARNING
Found the following significant warnings:
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov.Rd:40: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov_spatial.Rd:42: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov_spatial.Rd:62: file link ‘smooth.construct2’ in package ‘mgcv’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/MRFcov_spatial.Rd:112: file link ‘smooth.construct2’ in package ‘mgcv’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/bootstrap_MRF.Rd:46: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/cv_MRF_diag.Rd:74: file link ‘makePSOCKcluster’ in package ‘parallel’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/cv_MRF_diag.Rd:135: file link ‘createFolds’ in package ‘caret’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/predict_MRFnetworks.Rd:70: file link ‘graph.adjacency’ in package ‘igraph’ does not exist and so has been treated as a topic
Rd warning: /tmp/Rtmpa3Uu8b/R.INSTALL3be0211f9f17/MRFcov/man/prep_MRF_covariates_spatial.Rd:22: file link ‘smooth.construct2’ in package ‘mgcv’ does not exist and so has been treated as a topic
See https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/MRFcov-00install.html for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [20s/23s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [12s/14s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [25s/29s] OK
Running ‘testthat.R’ [25s/28s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [54s/62s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 WARNING