* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MGDrivE’ ...
** package ‘MGDrivE’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpiuhV7G/R.INSTALL5d14f4eb6f4f7/MGDrivE/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MGDrivE-Auxilary.cpp -o MGDrivE-Auxilary.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MGDrivE-DistanceFunctions.cpp -o MGDrivE-DistanceFunctions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MGDrivE-Kernels.cpp -o MGDrivE-Kernels.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MGDrivE.so MGDrivE-Auxilary.o MGDrivE-DistanceFunctions.o MGDrivE-Kernels.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpiuhV7G/R.INSTALL5d14f4eb6f4f7/MGDrivE/src'
make[1]: Entering directory '/tmp/RtmpiuhV7G/R.INSTALL5d14f4eb6f4f7/MGDrivE/src'
make[1]: Leaving directory '/tmp/RtmpiuhV7G/R.INSTALL5d14f4eb6f4f7/MGDrivE/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MGDrivE/00new/MGDrivE/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘MGDrivE’
finding HTML links ... done
MGDrivE-Cube html
MGDrivE-Model html
MGDrivE html
Network html
finding level-2 HTML links ... done
Patch html
aggregateFemales html
aggregateOutput html
basicBatchMigration html
basicRepeatedReleases html
calcAquaticStageSurvivalProbability html
calcAverageGenerationTime html
calcCos html
calcDensityDependentDeathRate html
calcExpKernel html
calcGammaKernel html
calcHaversine html
calcHurdleExpKernel html
calcLarvalDist html
calcLarvalPopEquilibrium html
calcLarvalStageMortalityRate html
calcLognormalKernel html
calcOmega html
calcPopulationGrowthRate html
calcQuantiles html
calcVinEll html
calcVinSph html
calcZeroInflation html
cube2csv html
cubeClvR html
cubeClvR2 html
cubeECHACR html
cubeECHACRX html
cubeHoming1RA html
cubeHomingDrive html
cubeKillerRescue html
cubeMEDEA html
cubeMendelian html
cubeModifiers html
cubeOneLocusTA html
cubeRIDL html
cubeReciprocalTranslocations html
cubeSplitDrive html
cubeTGD html
cubeTGDX html
cubeTwoLocusTA html
cubeWolbachia html
eraseDirectory html
generateReleaseVector html
get_alpha_Network html
get_beta_Network html
get_conF_Network html
get_conM_Network html
get_drivecubeindex_Network html
get_eta_Network html
get_femalePop_Patch html
get_genotypesID_Network html
get_genotypesN_Network html
get_malePop_Patch html
get_muAd_Network html
get_muAq_Network html
get_nPatch_Network html
get_omega_Network html
get_patchReleases_Network html
get_phi_Network html
get_s_Network html
get_tNow_Network html
get_tau_Network html
get_timeAq_Network html
get_xiF_Network html
get_xiM_Network html
ggColUtility html
kernels html
moveMatAll2 html
moveMatCascade3 html
moveMatDiag html
moveMatDiagOneCity html
moveMatDie html
moveMatIndependent3 html
moveMatMixedSpil html
moveMatTaleOfTwoCities html
moveMatTriDiagonal html
moveMatTriple html
multRun_Network html
normalise html
oneDay_Migration_Deterministic_Network
html
oneDay_Migration_Stochastic_Network html
oneDay_Network html
oneDay_PopDynamics_Patch html
oneDay_adultDeath_deterministic_Patch html
oneDay_adultDeath_stochastic_Patch html
oneDay_eggDM_deterministic_Patch html
oneDay_eggDM_stochastic_Patch html
oneDay_eggReleases_Patch html
oneDay_initOutput_Patch html
oneDay_larvaDM_deterministic_Patch html
oneDay_larvaDM_stochastic_Patch html
oneDay_mating_deterministic_Patch html
oneDay_mating_stochastic_Patch html
oneDay_migrationIn_Patch html
oneDay_oviposit_deterministic_Patch html
oneDay_oviposit_stochastic_Patch html
oneDay_pupaDM_deterministic_Patch html
oneDay_pupaDM_stochastic_Patch html
oneDay_pupation_deterministic_Patch html
oneDay_pupation_stochastic_Patch html
oneDay_releases_Patch html
oneDay_writeOutput_Patch html
oneRun_Network html
parameterizeMGDrivE html
plotMGDrivEMult html
plotMGDrivESingle html
quantileC html
rDirichlet html
reset_Network html
reset_Patch html
retrieveOutput html
set_NetworkPointer_Patch html
set_initialPopulation_Patch html
set_population_deterministic_Patch html
set_population_stochastic_Patch html
setupMGDrivE html
splitOutput html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MGDrivE)